Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG583_RS04330 Genome accession   NZ_CP051533
Coordinates   930300..931820 (-) Length   506 a.a.
NCBI ID   WP_202142548.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 925300..936820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS04315 (HG583_04305) hofF 925666..927165 (+) 1500 WP_202142546.1 outer membrane beta-barrel protein HofF -
  HG583_RS04320 (HG583_04310) - 927515..928173 (-) 659 Protein_858 restriction endonuclease subunit S -
  HG583_RS04325 (HG583_04315) - 928215..930275 (-) 2061 WP_202142547.1 heavy metal translocating P-type ATPase -
  HG583_RS04330 (HG583_04320) comM 930300..931820 (-) 1521 WP_202142548.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HG583_RS04335 (HG583_04325) def 931826..932350 (-) 525 WP_202142549.1 peptide deformylase -
  HG583_RS04340 (HG583_04330) clpP 932355..932942 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HG583_RS04345 (HG583_04335) tig 932963..934318 (-) 1356 WP_202142550.1 trigger factor -
  HG583_RS04350 (HG583_04340) - 934430..935266 (-) 837 WP_202142551.1 outer membrane protein -
  HG583_RS04355 (HG583_04345) hpaA 935296..936078 (-) 783 WP_187930232.1 flagellar sheath lipoprotein HpaA -
  HG583_RS04360 (HG583_04350) moaC 936197..936673 (-) 477 WP_001131532.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57235.24 Da        Isoelectric Point: 8.2333

>NTDB_id=385193 HG583_RS04330 WP_202142548.1 930300..931820(-) (comM) [Helicobacter pylori strain LIM-010]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAIERFNLSMRSINKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=385193 HG583_RS04330 WP_202142548.1 930300..931820(-) (comM) [Helicobacter pylori strain LIM-010]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATCTTCCCCATGCTTTTAGACATTGCCATCAAGCACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCCGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTCTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGCTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GGGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCTACCAAAGCATGCCGTTGCCAAG
ACAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATCTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATACTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTATTAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.399

100

0.368