Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HG583_RS02575 | Genome accession | NZ_CP051533 |
| Coordinates | 533413..534678 (+) | Length | 421 a.a. |
| NCBI ID | WP_202143256.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain LIM-010 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 528413..539678
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG583_RS02560 (HG583_02545) | - | 528559..530592 (+) | 2034 | WP_078243766.1 | type IA DNA topoisomerase | - |
| HG583_RS02565 (HG583_02550) | - | 530709..531878 (+) | 1170 | WP_078243767.1 | VirB8/TrbF family protein | - |
| HG583_RS02570 (HG583_02555) | - | 531878..533413 (+) | 1536 | WP_202143255.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HG583_RS02575 (HG583_02560) | comB10 | 533413..534678 (+) | 1266 | WP_202143256.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HG583_RS02580 (HG583_02565) | - | 534748..535041 (+) | 294 | WP_202139287.1 | hypothetical protein | - |
| HG583_RS02585 (HG583_02570) | - | 535034..535351 (+) | 318 | WP_033765808.1 | hypothetical protein | - |
| HG583_RS02590 (HG583_02575) | - | 535353..535655 (+) | 303 | WP_077656500.1 | hypothetical protein | - |
| HG583_RS02595 (HG583_02580) | - | 535652..536032 (+) | 381 | WP_237389115.1 | hypothetical protein | - |
| HG583_RS02600 (HG583_02585) | tnpA | 536120..536587 (+) | 468 | WP_000063685.1 | IS200/IS605 family transposase | - |
| HG583_RS02605 (HG583_02590) | - | 536556..537704 (+) | 1149 | WP_202142844.1 | RNA-guided endonuclease TnpB family protein | - |
| HG583_RS02610 (HG583_02595) | - | 537783..538457 (+) | 675 | Protein_514 | CpaF/VirB11 family protein | - |
| HG583_RS02615 (HG583_02600) | - | 538454..538927 (+) | 474 | WP_078249007.1 | hypothetical protein | - |
| HG583_RS02620 (HG583_02605) | - | 538929..539186 (+) | 258 | WP_078249008.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 421 a.a. Molecular weight: 47570.93 Da Isoelectric Point: 10.1989
>NTDB_id=385187 HG583_RS02575 WP_202143256.1 533413..534678(+) (comB10) [Helicobacter pylori strain LIM-010]
MGFFRVIRNAPIVSIFIVLMLIFCAWFFLYDDSSPKAVKKYVKGKFPISDYLYKKVGEKKILPQNNVVKQETKEERIKKS
CKDQITDSKGNLIDDDCNIIATQKQVNNLPNLPKDILKTKPTVTSNPSNYNTANEEEKTRLVILASRISSQKETQPPISI
KNSVSNTKSKEKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEVGGSKIVAQVESDIYATMGR
AVLIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK
MGFFRVIRNAPIVSIFIVLMLIFCAWFFLYDDSSPKAVKKYVKGKFPISDYLYKKVGEKKILPQNNVVKQETKEERIKKS
CKDQITDSKGNLIDDDCNIIATQKQVNNLPNLPKDILKTKPTVTSNPSNYNTANEEEKTRLVILASRISSQKETQPPISI
KNSVSNTKSKEKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEVGGSKIVAQVESDIYATMGR
AVLIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK
Nucleotide
Download Length: 1266 bp
>NTDB_id=385187 HG583_RS02575 WP_202143256.1 533413..534678(+) (comB10) [Helicobacter pylori strain LIM-010]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGTAAGTATCTTTATTGTTTTGATGCTTATTTTTTGTGCATGGTT
TTTCCTTTATGATGATAGCTCGCCTAAAGCAGTAAAAAAATATGTTAAAGGTAAGTTTCCAATCTCTGACTATCTCTACA
AAAAAGTGGGTGAAAAGAAAATCCTACCACAGAACAATGTCGTTAAACAAGAGACTAAAGAAGAAAGAATTAAAAAATCT
TGTAAGGATCAGATAACAGATAGTAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAATTTACCAAACTTACCAAAAGATATACTTAAAACCAAACCTACTGTTACCTCCAATCCTTCCAACTACAATACCGCTA
ACGAAGAAGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAGCCTCCAATCTCTATA
AAAAATAGTGTTTCTAACACAAAGTCCAAAGAAAAACGAGAACTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTT
TAAAAGAAAAAATGTAGCGAGCAGTGAAAACAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGA
TCACTCCTATTAGCAGTGAAGTAGGGGGGAGTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCTAAGGGGAGTAGAGCCATAGGCTATTACAACTCCAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAACAGGATCATCACGCCGCAAGGGGTCAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATA
ACGGTATGATAGGCACACTCCACAATAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGG
TTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGA
TTACATGATGATGCAAATGACAAGACAAACTGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGATCAAATCA
GGATTAAGCCTATTATCACTATTAGAGAAGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAGGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGTAAGTATCTTTATTGTTTTGATGCTTATTTTTTGTGCATGGTT
TTTCCTTTATGATGATAGCTCGCCTAAAGCAGTAAAAAAATATGTTAAAGGTAAGTTTCCAATCTCTGACTATCTCTACA
AAAAAGTGGGTGAAAAGAAAATCCTACCACAGAACAATGTCGTTAAACAAGAGACTAAAGAAGAAAGAATTAAAAAATCT
TGTAAGGATCAGATAACAGATAGTAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAATTTACCAAACTTACCAAAAGATATACTTAAAACCAAACCTACTGTTACCTCCAATCCTTCCAACTACAATACCGCTA
ACGAAGAAGAAAAAACCCGCCTTGTGATTTTAGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAGCCTCCAATCTCTATA
AAAAATAGTGTTTCTAACACAAAGTCCAAAGAAAAACGAGAACTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTT
TAAAAGAAAAAATGTAGCGAGCAGTGAAAACAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGA
TCACTCCTATTAGCAGTGAAGTAGGGGGGAGTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCTAAGGGGAGTAGAGCCATAGGCTATTACAACTCCAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAACAGGATCATCACGCCGCAAGGGGTCAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATA
ACGGTATGATAGGCACACTCCACAATAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGG
TTACTCATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGA
TTACATGATGATGCAAATGACAAGACAAACTGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGATCAAATCA
GGATTAAGCCTATTATCACTATTAGAGAAGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAGGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
56.458 |
64.371 |
0.363 |