Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0P95_RS09200 Genome accession   NZ_CP043567
Coordinates   2034208..2035584 (+) Length   458 a.a.
NCBI ID   WP_182333849.1    Uniprot ID   -
Organism   Stenotrophomonas acidaminiphila strain T0-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2029208..2040584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0P95_RS09185 cyoC 2030910..2031548 (+) 639 WP_054664219.1 cytochrome o ubiquinol oxidase subunit III -
  F0P95_RS09190 cyoD 2031548..2031889 (+) 342 WP_054664221.1 cytochrome o ubiquinol oxidase subunit IV -
  F0P95_RS09195 - 2032012..2034069 (-) 2058 WP_182333847.1 bifunctional diguanylate cyclase/phosphodiesterase -
  F0P95_RS09200 radA 2034208..2035584 (+) 1377 WP_182333849.1 DNA repair protein RadA Machinery gene
  F0P95_RS09205 - 2035630..2036100 (+) 471 WP_226050101.1 hypothetical protein -
  F0P95_RS09210 ccsA 2036129..2036923 (-) 795 WP_182333857.1 cytochrome c biogenesis protein CcsA -
  F0P95_RS09215 ffh 2037042..2038421 (+) 1380 WP_182333860.1 signal recognition particle protein -
  F0P95_RS09220 - 2038497..2039567 (+) 1071 WP_182333862.1 nitronate monooxygenase -
  F0P95_RS09225 - 2039564..2040358 (+) 795 WP_232528663.1 aminotransferase class IV -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48183.50 Da        Isoelectric Point: 7.0909

>NTDB_id=385177 F0P95_RS09200 WP_182333849.1 2034208..2035584(+) (radA) [Stenotrophomonas acidaminiphila strain T0-18]
MAKNRTAYVCSECGAEYSKWQGQCGECGAWNVLAEVVLESAAAVKAPAARRGGWAGKLEPPKITALKDVQQSEHARVSTG
IGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQALARMAGSLPVLYVTGEESLAQVAGRAVRLDLPLDGLDALAETGVE
LILQHAAAARPRLIVADSVQTLWTETLTAAPGSVSQVRESAARLVRFAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGESGSRFRVLRAFKNRFGAVNELGVFAMGEKGLKEVPNPSAIFLSGGSTRQPGSCVMVTREGTRPLLVEVQALVDS
SPLSNPRRVAVGLEQNRLAMLLAVLHRHGGVMVGDQDVFINVVGGIRVQETAVDLPVLLAVLSSLRDQPLAEKTIAFGEV
GLSGEIRPVPNGEERLREAATHGFKRAIVPRANAPKAGSVKGMEVIAVERLAEAIEAA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=385177 F0P95_RS09200 WP_182333849.1 2034208..2035584(+) (radA) [Stenotrophomonas acidaminiphila strain T0-18]
ATGGCGAAGAACCGCACCGCCTATGTCTGCAGCGAATGCGGCGCCGAGTACAGCAAATGGCAGGGCCAGTGCGGCGAATG
CGGCGCCTGGAACGTCCTGGCCGAGGTGGTGCTGGAAAGCGCGGCCGCGGTGAAGGCGCCGGCCGCGCGCCGCGGCGGCT
GGGCCGGCAAGCTCGAGCCGCCGAAGATCACCGCGCTCAAGGACGTGCAGCAGAGCGAGCATGCGCGGGTGTCCACCGGC
ATCGGCGAGTTCGACCGGGTGCTGGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGGTCGGCGGCGACCCCGGCATCGG
CAAATCGACCCTGCTGCTGCAGGCGCTGGCGAGGATGGCCGGCAGCCTGCCGGTGCTGTACGTGACCGGCGAGGAATCCC
TGGCGCAGGTGGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGGCTGGACGCGCTGGCCGAGACCGGCGTCGAA
CTGATCCTGCAGCACGCCGCCGCGGCGCGCCCCAGGCTGATCGTCGCCGACTCGGTGCAGACGCTGTGGACCGAGACGCT
GACCGCCGCGCCGGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCACGGCTGGTGCGCTTTGCCAAGGAGACCGGCACCG
CGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGACGCGGTG
CTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGGGTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACT
GGGCGTGTTCGCGATGGGCGAGAAAGGGCTGAAGGAAGTGCCCAACCCCTCGGCCATCTTCCTGTCCGGCGGCAGCACGC
GCCAGCCCGGCAGCTGCGTGATGGTCACCCGCGAGGGCACCCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGATTCC
TCGCCGCTGTCCAACCCGCGCCGGGTCGCGGTGGGACTGGAGCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCG
CCATGGCGGGGTGATGGTCGGCGACCAGGACGTGTTCATCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGGTCG
ACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCAGCCGTTGGCGGAGAAGACCATCGCCTTCGGCGAGGTC
GGGCTGTCCGGCGAGATCCGCCCGGTACCCAATGGCGAGGAGCGCCTGCGCGAAGCGGCCACCCATGGTTTCAAGCGCGC
CATCGTACCCCGCGCCAACGCGCCCAAGGCCGGTTCGGTCAAGGGCATGGAGGTGATCGCGGTCGAGCGGCTGGCCGAAG
CGATCGAGGCGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.489
  radA Streptococcus mitis NCTC 12261

42.544

99.563

0.424
  radA Streptococcus pneumoniae Rx1

42.544

99.563

0.424
  radA Streptococcus pneumoniae D39

42.544

99.563

0.424
  radA Streptococcus pneumoniae R6

42.544

99.563

0.424
  radA Streptococcus pneumoniae TIGR4

42.544

99.563

0.424
  radA Streptococcus mitis SK321

42.325

99.563

0.421

Multiple sequence alignment