Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG583_RS00530 Genome accession   NZ_CP051533
Coordinates   110985..111452 (-) Length   155 a.a.
NCBI ID   WP_202143028.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 105985..116452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS00515 (HG583_00515) - 106378..107157 (-) 780 WP_202143025.1 glycosyltransferase family 2 protein -
  HG583_RS00520 (HG583_00520) tlpB 107188..108885 (-) 1698 WP_202143026.1 methyl-accepting chemotaxis protein TlpB -
  HG583_RS00525 (HG583_00525) - 109098..110774 (-) 1677 WP_341848313.1 5'-nucleotidase C-terminal domain-containing protein -
  HG583_RS00530 (HG583_00530) luxS 110985..111452 (-) 468 WP_202143028.1 S-ribosylhomocysteine lyase Regulator
  HG583_RS00535 (HG583_00535) - 111492..112634 (-) 1143 WP_202143029.1 cystathionine gamma-synthase -
  HG583_RS00540 (HG583_00540) - 112659..113576 (-) 918 WP_202143030.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG583_RS00545 (HG583_00545) - 113691..114269 (+) 579 WP_202143031.1 hypothetical protein -
  HG583_RS00550 (HG583_00550) dnaK 114515..116377 (-) 1863 WP_202143032.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17709.21 Da        Isoelectric Point: 6.8405

>NTDB_id=385171 HG583_RS00530 WP_202143028.1 110985..111452(-) (luxS) [Helicobacter pylori strain LIM-010]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDDYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=385171 HG583_RS00530 WP_202143028.1 110985..111452(-) (luxS) [Helicobacter pylori strain LIM-010]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTCAATTTAGATCACACCAAAGTCAAAGCCCCTTATGTACGCATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAACAACCCAACCAAGATCACATGGACA
TGCCTAGCCTACACTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACGATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGACGTGTTAAAGGCTAAAGAAGTGCCTGCGAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCTAAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381