Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HGK51_RS06530 Genome accession   NZ_CP051511
Coordinates   1337244..1338557 (-) Length   437 a.a.
NCBI ID   WP_202170675.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1332244..1343557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS06500 (HGK51_06485) nadC 1332707..1333528 (-) 822 WP_202170672.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HGK51_RS06505 (HGK51_06490) nadA 1333528..1334538 (-) 1011 WP_202135474.1 quinolinate synthase NadA -
  HGK51_RS06510 (HGK51_06495) - 1334528..1335331 (-) 804 WP_202170673.1 phosphatidylserine decarboxylase -
  HGK51_RS06515 (HGK51_06500) - 1335328..1335831 (-) 504 WP_000953078.1 hypothetical protein -
  HGK51_RS06520 (HGK51_06505) - 1335844..1336338 (-) 495 WP_202170674.1 hypothetical protein -
  HGK51_RS06525 (HGK51_06510) mqnP 1336331..1337215 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HGK51_RS06530 (HGK51_06515) comEC/comE3 1337244..1338557 (-) 1314 WP_202170675.1 ComEC/Rec2 family competence protein Machinery gene
  HGK51_RS06535 (HGK51_06520) - 1338554..1340020 (-) 1467 WP_202170676.1 replicative DNA helicase -
  HGK51_RS06540 (HGK51_06525) - 1340031..1341425 (-) 1395 WP_202170677.1 NAD(P)H-hydrate dehydratase -
  HGK51_RS06545 (HGK51_06530) crdS 1341428..1342630 (-) 1203 WP_202171179.1 copper-sensing histidine kinase CrdS -
  HGK51_RS06550 (HGK51_06535) crdR 1342596..1343237 (-) 642 WP_202170678.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50233.27 Da        Isoelectric Point: 9.8918

>NTDB_id=385155 HGK51_RS06530 WP_202170675.1 1337244..1338557(-) (comEC/comE3) [Helicobacter pylori strain ASHA-006]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLLYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISVFSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=385155 HGK51_RS06530 WP_202170675.1 1337244..1338557(-) (comEC/comE3) [Helicobacter pylori strain ASHA-006]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTCTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTCTTTATACCCCATTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTGCCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952