Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HGK51_RS05685 Genome accession   NZ_CP051511
Coordinates   1184615..1185664 (+) Length   349 a.a.
NCBI ID   WP_202170616.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179615..1190664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS05670 (HGK51_05655) - 1180249..1182007 (+) 1759 Protein_1111 hypothetical protein -
  HGK51_RS05675 (HGK51_05660) asd 1182198..1183238 (-) 1041 WP_202170615.1 aspartate-semialdehyde dehydrogenase -
  HGK51_RS05680 (HGK51_05665) hisS 1183225..1184553 (-) 1329 WP_000632529.1 histidine--tRNA ligase -
  HGK51_RS05685 (HGK51_05670) waaF 1184615..1185664 (+) 1050 WP_202170616.1 lipopolysaccharide heptosyltransferase II Regulator
  HGK51_RS05690 (HGK51_05675) - 1185858..1186022 (-) 165 WP_000744175.1 hypothetical protein -
  HGK51_RS05695 (HGK51_05680) fusA 1186564..1188642 (-) 2079 WP_000101894.1 elongation factor G -
  HGK51_RS05700 (HGK51_05685) rpsG 1188654..1189121 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HGK51_RS05705 (HGK51_05690) rpsL 1189137..1189544 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39619.53 Da        Isoelectric Point: 9.8130

>NTDB_id=385154 HGK51_RS05685 WP_202170616.1 1184615..1185664(+) (waaF) [Helicobacter pylori strain ASHA-006]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIISAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRICP
LKNEKNHLCMKSITPLEVLKAAHTLLEKL

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=385154 HGK51_RS05685 WP_202170616.1 1184615..1185664(+) (waaF) [Helicobacter pylori strain ASHA-006]
ATGAGTGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTATTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAATTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCTTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361