Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HGK51_RS03880 Genome accession   NZ_CP051511
Coordinates   805156..806676 (-) Length   506 a.a.
NCBI ID   WP_202171143.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 800156..811676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS03870 (HGK51_03860) - 801710..803035 (-) 1326 WP_202171141.1 restriction endonuclease subunit S -
  HGK51_RS03875 (HGK51_03865) - 803071..805131 (-) 2061 WP_202171142.1 heavy metal translocating P-type ATPase -
  HGK51_RS03880 (HGK51_03870) comM 805156..806676 (-) 1521 WP_202171143.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HGK51_RS03885 (HGK51_03875) def 806679..807206 (-) 528 WP_202133198.1 peptide deformylase -
  HGK51_RS03890 (HGK51_03880) clpP 807211..807798 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HGK51_RS03895 (HGK51_03885) tig 807819..809174 (-) 1356 WP_202171144.1 trigger factor -
  HGK51_RS03900 (HGK51_03890) - 809287..810123 (-) 837 WP_202170440.1 outer membrane protein -
  HGK51_RS03905 (HGK51_03895) hpaA 810149..810931 (-) 783 WP_202133195.1 flagellar sheath lipoprotein HpaA -
  HGK51_RS03910 (HGK51_03900) moaC 811050..811526 (-) 477 WP_001131556.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57249.27 Da        Isoelectric Point: 8.3924

>NTDB_id=385147 HGK51_RS03880 WP_202171143.1 805156..806676(-) (comM) [Helicobacter pylori strain ASHA-006]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQVVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSTFNGKLNEEQIERFCPLNAEAQRLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=385147 HGK51_RS03880 WP_202171143.1 805156..806676(-) (comM) [Helicobacter pylori strain ASHA-006]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAGGCAACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCTAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCACCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGTTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAACCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTGCAACTAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGAAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTAGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCACTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CACAAAGGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.036

100

0.97
  comM Acinetobacter baylyi ADP1

36.008

100

0.364