Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EVS87_RS19775 Genome accession   NZ_CP043559
Coordinates   3815970..3816260 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3810970..3821260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS19735 (EVS87_019735) - 3811003..3811332 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  EVS87_RS19740 (EVS87_019740) - 3811345..3811785 (+) 441 WP_035391564.1 YaaR family protein -
  EVS87_RS19745 (EVS87_019745) holB 3811797..3812786 (+) 990 WP_024719351.1 DNA polymerase III subunit delta' -
  EVS87_RS19750 (EVS87_019750) - 3812789..3813616 (+) 828 WP_024719352.1 stage 0 sporulation family protein -
  EVS87_RS19755 (EVS87_019755) yabA 3813631..3813984 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  EVS87_RS19760 (EVS87_019760) - 3814040..3814783 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EVS87_RS19765 (EVS87_019765) - 3814770..3815069 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  EVS87_RS19770 (EVS87_019770) rsmI 3815044..3815925 (+) 882 WP_135009446.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EVS87_RS19775 (EVS87_019775) abrB 3815970..3816260 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EVS87_RS19785 (EVS87_019785) metG 3816780..3818780 (+) 2001 WP_135009444.1 methionine--tRNA ligase -
  EVS87_RS19790 (EVS87_019790) - 3818862..3819629 (+) 768 WP_017359325.1 TatD family hydrolase -
  EVS87_RS19795 (EVS87_019795) - 3819874..3821076 (+) 1203 WP_007496219.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=385143 EVS87_RS19775 WP_087975202.1 3815970..3816260(-) (abrB) [Bacillus altitudinis strain CHB19]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=385143 EVS87_RS19775 WP_087975202.1 3815970..3816260(-) (abrB) [Bacillus altitudinis strain CHB19]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment