Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EVS87_RS19540 Genome accession   NZ_CP043559
Coordinates   3771980..3773092 (+) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain CHB19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3766980..3778092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS19515 (EVS87_019515) rnpA 3767731..3768090 (-) 360 WP_008347592.1 ribonuclease P protein component -
  EVS87_RS19520 (EVS87_019520) rpmH 3768169..3768303 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  EVS87_RS19525 (EVS87_019525) dnaA 3768924..3770264 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  EVS87_RS19530 (EVS87_019530) dnaN 3770461..3771597 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  EVS87_RS19535 (EVS87_019535) yaaA 3771748..3771963 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  EVS87_RS19540 (EVS87_019540) recF 3771980..3773092 (+) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  EVS87_RS19545 (EVS87_019545) remB 3773110..3773355 (+) 246 WP_008360920.1 extracellular matrix regulator RemB -
  EVS87_RS19550 (EVS87_019550) gyrB 3773413..3775329 (+) 1917 WP_024718422.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EVS87_RS19555 (EVS87_019555) gyrA 3775564..3778068 (+) 2505 WP_017359864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=385141 EVS87_RS19540 WP_007497487.1 3771980..3773092(+) (recF) [Bacillus altitudinis strain CHB19]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=385141 EVS87_RS19540 WP_007497487.1 3771980..3773092(+) (recF) [Bacillus altitudinis strain CHB19]
ATGTACATTCAAAGTCTGGCGTTAACTTCGTACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTATATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment