Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EVS87_RS11785 Genome accession   NZ_CP043559
Coordinates   2277574..2278344 (-) Length   256 a.a.
NCBI ID   WP_135009254.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2272574..2283344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS11765 (EVS87_011765) - 2272667..2273488 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  EVS87_RS11770 (EVS87_011770) - 2273514..2274152 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  EVS87_RS11775 (EVS87_011775) glyS 2274319..2276364 (-) 2046 WP_135009253.1 glycine--tRNA ligase subunit beta -
  EVS87_RS11780 (EVS87_011780) glyQ 2276357..2277244 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  EVS87_RS11785 (EVS87_011785) recO 2277574..2278344 (-) 771 WP_135009254.1 DNA repair protein RecO Machinery gene
  EVS87_RS11790 (EVS87_011790) - 2278380..2278523 (-) 144 WP_008342408.1 YqzL family protein -
  EVS87_RS11795 (EVS87_011795) era 2278671..2279576 (-) 906 WP_007501305.1 GTPase Era -
  EVS87_RS11800 (EVS87_011800) - 2279569..2279967 (-) 399 WP_008342410.1 cytidine deaminase -
  EVS87_RS11805 (EVS87_011805) - 2280080..2280466 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  EVS87_RS11810 (EVS87_011810) ybeY 2280444..2280923 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  EVS87_RS11815 (EVS87_011815) - 2280924..2283035 (-) 2112 WP_396466850.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29375.07 Da        Isoelectric Point: 8.4348

>NTDB_id=385118 EVS87_RS11785 WP_135009254.1 2277574..2278344(-) (recO) [Bacillus altitudinis strain CHB19]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPATARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=385118 EVS87_RS11785 WP_135009254.1 2277574..2278344(-) (recO) [Bacillus altitudinis strain CHB19]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGGGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAACAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.172

100

0.762

Multiple sequence alignment