Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   EVS87_RS06680 Genome accession   NZ_CP043559
Coordinates   1290597..1292702 (-) Length   701 a.a.
NCBI ID   WP_061418800.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285597..1297702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS06650 (EVS87_006650) - 1285840..1286082 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  EVS87_RS06655 (EVS87_006655) - 1286134..1287633 (-) 1500 WP_007498739.1 ATP-binding protein -
  EVS87_RS06660 (EVS87_006660) - 1287838..1288293 (+) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  EVS87_RS06665 (EVS87_006665) motB 1288480..1289247 (-) 768 WP_024719648.1 flagellar motor protein MotB -
  EVS87_RS06670 (EVS87_006670) motA 1289240..1290034 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  EVS87_RS06680 (EVS87_006680) clpC 1290597..1292702 (-) 2106 WP_061418800.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  EVS87_RS06685 (EVS87_006685) - 1292948..1293991 (+) 1044 WP_135008967.1 hypothetical protein -
  EVS87_RS06690 (EVS87_006690) queC 1294267..1294923 (+) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  EVS87_RS06695 (EVS87_006695) queD 1294924..1295364 (+) 441 WP_024719651.1 6-carboxytetrahydropterin synthase QueD -
  EVS87_RS06700 (EVS87_006700) queE 1295357..1296088 (+) 732 WP_024719652.1 7-carboxy-7-deazaguanine synthase QueE -
  EVS87_RS06705 (EVS87_006705) queF 1296104..1296601 (+) 498 WP_003211403.1 preQ(1) synthase -
  EVS87_RS06710 (EVS87_006710) - 1296860..1297078 (+) 219 WP_017367128.1 hypothetical protein -
  EVS87_RS06715 (EVS87_006715) - 1297203..1297391 (-) 189 WP_003211747.1 YkvS family protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78190.80 Da        Isoelectric Point: 5.1807

>NTDB_id=385103 EVS87_RS06680 WP_061418800.1 1290597..1292702(-) (clpC) [Bacillus altitudinis strain CHB19]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=385103 EVS87_RS06680 WP_061418800.1 1290597..1292702(-) (clpC) [Bacillus altitudinis strain CHB19]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTGTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTATACGTGGTCAATTTGAAGAACGGATGAAGCAATTGATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAGATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCTGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGCATTCAGGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATTGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTACAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTATTCGTTGGACCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAATACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(253-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

57.104

100

0.602
  clpE Streptococcus mutans UA159

56.644

100

0.602
  clpE Streptococcus pneumoniae Rx1

55.983

100

0.581
  clpE Streptococcus pneumoniae D39

55.983

100

0.581
  clpE Streptococcus pneumoniae R6

55.983

100

0.581
  clpE Streptococcus pneumoniae TIGR4

55.983

100

0.581
  clpC Bacillus subtilis subsp. subtilis str. 168

53.651

95.72

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.855

90.728

0.425
  clpC Streptococcus thermophilus LMD-9

44.427

92.154

0.409
  clpC Streptococcus thermophilus LMG 18311

44.272

92.154

0.408
  clpC Streptococcus pneumoniae TIGR4

44.479

90.442

0.402
  clpC Streptococcus pneumoniae Rx1

44.674

89.729

0.401
  clpC Streptococcus pneumoniae D39

44.674

89.729

0.401
  clpC Streptococcus mutans UA159

44.127

89.872

0.397

Multiple sequence alignment