Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   F0316_RS19610 Genome accession   NZ_CP043556
Coordinates   1092116..1093285 (-) Length   389 a.a.
NCBI ID   WP_001039913.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087116..1098285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS19600 (F0316_19605) cqsS 1089827..1091887 (+) 2061 WP_001897118.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  F0316_RS19610 (F0316_19615) cqsA 1092116..1093285 (-) 1170 WP_001039913.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  F0316_RS19615 (F0316_19620) - 1093482..1094444 (-) 963 WP_001104009.1 TDT family transporter -
  F0316_RS19620 (F0316_19625) clcA 1094591..1095997 (-) 1407 WP_069503695.1 H(+)/Cl(-) exchange transporter ClcA -
  F0316_RS19625 (F0316_19630) - 1096463..1097452 (+) 990 WP_149560863.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43520.58 Da        Isoelectric Point: 6.2265

>NTDB_id=385083 F0316_RS19610 WP_001039913.1 1092116..1093285(-) (cqsA) [Vibrio cholerae strain RFB16]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVTDEQIAKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=385083 F0316_RS19610 WP_001039913.1 1092116..1093285(-) (cqsA) [Vibrio cholerae strain RFB16]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTTTGGCTAAGTTCACAGGCTTTGATGAATGTCTATTATCTCAATC
TGGTTGGAACGCAAACGTCGGTTTATTACAAACCATTTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCGCGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTAATTCAACGTCATGGCCCTGGGATCATTGTCGTAGACTCGATTTACAGCACGTTAGGTACGATTGCACCGCTAGCGGA
ACTGGTCAATATCAGTAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGCACACATGGCCCTAATG
GTGCAGGTTTATTGGCAGAATTAGGCCTCACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGCAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCAGCGATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACGACTTTAGAGATTATTGAATCTGCGGATAATCGTCGTCAGCATTTAG
ATCGTATGGCAAGAAAATTACGCATAGGATTATCCCAGCTGGGATTAACCATTCGCAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCAAAGAATAAAAACATTATTCGCTTATCACTCAATAGTGATGTGACCGATGAGCAAATCGCCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGCGGTGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

99.486

100

0.995

Multiple sequence alignment