Detailed information NTG0385066

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F0316_RS11210
• Genome accession: NZ_CP043554
• Coordinates: 2421660..2422667 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain RFB16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2416660..2427667

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0316_RS11200 (F0316_11200)	cysM	2417823..2418710 (+)	888	WP_149560480.1	cysteine synthase CysM	-
F0316_RS11205 (F0316_11205)	mutS	2418978..2421566 (+)	2589	WP_033838995.1	DNA mismatch repair protein MutS	-
F0316_RS11210 (F0316_11210)	rpoS	2421660..2422667 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
F0316_RS11215 (F0316_11215)	nlpD	2422741..2423676 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
F0316_RS11220 (F0316_11220)	-	2423676..2424302 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
F0316_RS11225 (F0316_11225)	surE	2424295..2425047 (-)	753	WP_172626019.1	5'/3'-nucleotidase SurE	-
F0316_RS11230 (F0316_11230)	truD	2425049..2426134 (-)	1086	WP_149560482.1	tRNA pseudouridine(13) synthase TruD	-
F0316_RS11235 (F0316_11235)	ispF	2426164..2426640 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F0316_RS11240 (F0316_11240)	ispD	2426637..2427335 (-)	699	WP_001061954.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F0316_RS11245 (F0316_11245)	ftsB	2427332..2427616 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=385066 F0316_RS11210 WP_000116735.1 2421660..2422667(-) (rpoS) [Vibrio cholerae strain RFB16]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=385066 F0316_RS11210 WP_000116735.1 2421660..2422667(-) (rpoS) [Vibrio cholerae strain RFB16]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAAATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997