Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F0316_RS11170 Genome accession   NZ_CP043554
Coordinates   2411637..2412701 (-) Length   354 a.a.
NCBI ID   WP_001914087.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2406637..2417701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS11155 (F0316_11155) - 2406900..2408087 (-) 1188 WP_001912545.1 aspartate kinase -
  F0316_RS11160 (F0316_11160) alaS 2408291..2410873 (-) 2583 WP_060780108.1 alanine--tRNA ligase -
  F0316_RS11165 (F0316_11165) recX 2411046..2411504 (-) 459 WP_114776961.1 recombination regulator RecX -
  F0316_RS11170 (F0316_11170) recA 2411637..2412701 (-) 1065 WP_001914087.1 recombinase RecA Machinery gene
  F0316_RS11175 (F0316_11175) pncC 2412835..2413341 (-) 507 WP_060780109.1 nicotinamide-nucleotide amidase -
  F0316_RS11180 (F0316_11180) - 2413508..2414638 (-) 1131 WP_002051153.1 sulfate/molybdate ABC transporter ATP-binding protein -
  F0316_RS11185 (F0316_11185) cysW 2414635..2415498 (-) 864 WP_002031020.1 sulfate ABC transporter permease subunit CysW -
  F0316_RS11190 (F0316_11190) cysT 2415510..2416361 (-) 852 WP_040073390.1 sulfate/thiosulfate ABC transporter permease CysT -
  F0316_RS11195 (F0316_11195) cysP 2416438..2417439 (-) 1002 WP_149560479.1 thiosulfate ABC transporter substrate-binding protein CysP -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38235.89 Da        Isoelectric Point: 5.0766

>NTDB_id=385064 F0316_RS11170 WP_001914087.1 2411637..2412701(-) (recA) [Vibrio cholerae strain RFB16]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAESSSAADDVEFGAVPEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=385064 F0316_RS11170 WP_001914087.1 2411637..2412701(-) (recA) [Vibrio cholerae strain RFB16]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GCCTACCAATGGGACGTATCGTTGAGATTTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCGCAACGTGAAGGCAAAACCTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCGGTCTATGCCAAGAAACTGGG
CGTGAATATCGATGAACTGCTGGTTTCTCAGCCTGATACCGGCGAGCAAGCGCTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTGATTGTGGTTGACTCGGTCGCGGCTTTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCGGCACCGTTTAAAGAAGCCAACACTCAGATCATGTACGGCCAAGGTTT
CAACCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAGATGGTTGAAAAGTCAGGTGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAATCATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

99.718

100

0.997
  recA Vibrio cholerae O1 biovar El Tor strain E7946

99.718

100

0.997
  recA Pseudomonas stutzeri DSM 10701

75.841

92.373

0.701
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baylyi ADP1

71.176

96.045

0.684
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Neisseria gonorrhoeae MS11

66.667

100

0.667
  recA Neisseria gonorrhoeae MS11

66.667

100

0.667
  recA Neisseria gonorrhoeae strain FA1090

66.667

100

0.667
  recA Ralstonia pseudosolanacearum GMI1000

69.659

91.243

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

91.525

0.59
  recA Helicobacter pylori strain NCTC11637

61.31

94.915

0.582
  recA Helicobacter pylori 26695

61.012

94.915

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.615

91.808

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.678

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.3

88.418

0.551

Multiple sequence alignment