Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F0316_RS11070 Genome accession   NZ_CP043554
Coordinates   2394979..2395497 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2389979..2400497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS11045 (F0316_11045) rimM 2390088..2390642 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  F0316_RS11050 (F0316_11050) rpsP 2390670..2390918 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  F0316_RS11055 (F0316_11055) ffh 2391154..2392539 (-) 1386 WP_000462715.1 signal recognition particle protein -
  F0316_RS11060 (F0316_11060) - 2392752..2393546 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  F0316_RS11065 (F0316_11065) - 2393629..2394909 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  F0316_RS11070 (F0316_11070) luxS 2394979..2395497 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  F0316_RS11075 (F0316_11075) gshA 2395744..2397315 (-) 1572 WP_000032609.1 glutamate--cysteine ligase -
  F0316_RS11080 (F0316_11080) - 2397427..2400282 (-) 2856 WP_172626017.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=385063 F0316_RS11070 WP_001130227.1 2394979..2395497(-) (luxS) [Vibrio cholerae strain RFB16]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=385063 F0316_RS11070 WP_001130227.1 2394979..2395497(-) (luxS) [Vibrio cholerae strain RFB16]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATTTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment