Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG558_RS01635 Genome accession   NZ_CP051509
Coordinates   337916..339151 (+) Length   411 a.a.
NCBI ID   WP_202166868.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-009     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332916..344151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG558_RS07830 (HG558_01610) - 333329..335262 (+) 1934 Protein_305 type IA DNA topoisomerase -
  HG558_RS07980 - 335262..335390 (+) 129 WP_000243255.1 hypothetical protein -
  HG558_RS01625 (HG558_01615) - 335392..336378 (+) 987 WP_202166866.1 VirB8/TrbF family protein -
  HG558_RS01630 (HG558_01620) - 336378..337919 (+) 1542 WP_202166867.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HG558_RS01635 (HG558_01625) comB10 337916..339151 (+) 1236 WP_202166868.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG558_RS01640 (HG558_01630) - 339221..339514 (+) 294 WP_165519154.1 hypothetical protein -
  HG558_RS01645 (HG558_01635) - 339507..339771 (+) 265 Protein_311 hypothetical protein -
  HG558_RS01650 (HG558_01640) - 339768..340067 (+) 300 WP_202166869.1 hypothetical protein -
  HG558_RS01655 (HG558_01645) - 340067..341008 (+) 942 Protein_313 ATPase, T2SS/T4P/T4SS family -
  HG558_RS01660 (HG558_01650) - 341005..341460 (+) 456 WP_202135313.1 mobilization protein -
  HG558_RS01665 (HG558_01655) - 341457..341747 (+) 291 WP_202135314.1 hypothetical protein -
  HG558_RS01670 (HG558_01660) - 341748..342305 (+) 558 WP_202135315.1 hypothetical protein -
  HG558_RS01675 (HG558_01665) - 342306..344033 (+) 1728 WP_202166870.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46385.46 Da        Isoelectric Point: 10.0008

>NTDB_id=385056 HG558_RS01635 WP_202166868.1 337916..339151(+) (comB10) [Helicobacter pylori strain ASHA-009]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITAGRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNDIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=385056 HG558_RS01635 WP_202166868.1 337916..339151(+) (comB10) [Helicobacter pylori strain ASHA-009]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCCGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCTTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCTAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGGCAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATGATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.138

70.56

0.382