Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F0316_RS07955 Genome accession   NZ_CP043554
Coordinates   1719234..1720658 (+) Length   474 a.a.
NCBI ID   WP_149560384.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1714234..1725658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS07935 (F0316_07935) - 1714628..1715413 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  F0316_RS07940 (F0316_07940) cobT 1715413..1716438 (-) 1026 WP_172625992.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  F0316_RS07945 (F0316_07945) msrB 1716924..1717370 (-) 447 WP_114732766.1 peptide-methionine (R)-S-oxide reductase MsrB -
  F0316_RS07950 (F0316_07950) - 1717716..1719089 (+) 1374 WP_000117950.1 L-cystine transporter -
  F0316_RS07955 (F0316_07955) sbcB 1719234..1720658 (+) 1425 WP_149560384.1 exodeoxyribonuclease I Machinery gene
  F0316_RS07960 (F0316_07960) - 1720690..1721064 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  F0316_RS07965 (F0316_07965) - 1721055..1721729 (+) 675 WP_000266239.1 LrgB family protein -
  F0316_RS07970 (F0316_07970) cdd 1721899..1722786 (+) 888 WP_148503253.1 cytidine deaminase -
  F0316_RS07975 (F0316_07975) - 1722945..1723820 (+) 876 WP_000462868.1 AEC family transporter -
  F0316_RS07980 (F0316_07980) purT 1723974..1725149 (+) 1176 WP_172625993.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54500.86 Da        Isoelectric Point: 5.9825

>NTDB_id=385055 F0316_RS07955 WP_149560384.1 1719234..1720658(+) (sbcB) [Vibrio cholerae strain RFB16]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIEREQCLAHLNVIRQHPEIREKLVSVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=385055 F0316_RS07955 WP_149560384.1 1719234..1720658(+) (sbcB) [Vibrio cholerae strain RFB16]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGAGCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GTCGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987

Multiple sequence alignment