Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG558_RS00530 Genome accession   NZ_CP051509
Coordinates   105798..106265 (-) Length   155 a.a.
NCBI ID   WP_202166755.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-009     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 100798..111265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG558_RS00515 (HG558_00515) - 101195..101977 (-) 783 WP_000922048.1 glycosyltransferase family 2 protein -
  HG558_RS00520 (HG558_00520) tlpB 102008..103705 (-) 1698 WP_202166753.1 methyl-accepting chemotaxis protein TlpB -
  HG558_RS00525 (HG558_00525) - 103912..105657 (-) 1746 WP_202166754.1 5'-nucleotidase C-terminal domain-containing protein -
  HG558_RS00530 (HG558_00530) luxS 105798..106265 (-) 468 WP_202166755.1 S-ribosylhomocysteine lyase Regulator
  HG558_RS00535 (HG558_00535) - 106279..107421 (-) 1143 WP_202166756.1 cystathionine gamma-synthase -
  HG558_RS00540 (HG558_00540) - 107442..108359 (-) 918 WP_014662180.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG558_RS00545 (HG558_00545) - 108467..109041 (+) 575 Protein_100 hypothetical protein -
  HG558_RS00550 (HG558_00550) dnaK 109180..111042 (-) 1863 WP_000521035.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17682.18 Da        Isoelectric Point: 6.8403

>NTDB_id=385050 HG558_RS00530 WP_202166755.1 105798..106265(-) (luxS) [Helicobacter pylori strain ASHA-009]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGINGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=385050 HG558_RS00530 WP_202166755.1 105798..106265(-) (luxS) [Helicobacter pylori strain ASHA-009]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCATTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAGTTATGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374