Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   F0316_RS01225 Genome accession   NZ_CP043554
Coordinates   253297..253929 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain RFB16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 248297..258929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS01205 (F0316_01205) - 248447..249658 (+) 1212 WP_000215477.1 aspartate aminotransferase family protein -
  F0316_RS01210 (F0316_01210) astA 249798..250817 (+) 1020 WP_000962042.1 arginine N-succinyltransferase -
  F0316_RS01215 (F0316_01215) astD 250827..252284 (+) 1458 WP_149560153.1 succinylglutamate-semialdehyde dehydrogenase -
  F0316_RS01220 (F0316_01220) - 252427..253218 (+) 792 WP_069213162.1 DUF1338 domain-containing protein -
  F0316_RS01225 (F0316_01225) crp 253297..253929 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  F0316_RS01230 (F0316_01230) - 254172..255041 (-) 870 WP_001274667.1 phosphoribulokinase -
  F0316_RS01235 (F0316_01235) - 255138..255347 (-) 210 WP_000586561.1 YheU family protein -
  F0316_RS01240 (F0316_01240) - 255476..256465 (-) 990 WP_000627575.1 hydrolase -
  F0316_RS01245 (F0316_01245) - 256462..256947 (-) 486 WP_001278734.1 TIGR02444 family protein -
  F0316_RS01250 (F0316_01250) - 256948..258864 (-) 1917 WP_069213161.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=385043 F0316_RS01225 WP_000242749.1 253297..253929(-) (crp) [Vibrio cholerae strain RFB16]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=385043 F0316_RS01225 WP_000242749.1 253297..253929(-) (crp) [Vibrio cholerae strain RFB16]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAACCTTGCACGTCAGCCCGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAACAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment