Detailed information NTG0385037

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: F0316_RS00930
• Genome accession: NZ_CP043554
• Coordinates: 191139..192146 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain RFB16
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 186139..197146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0316_RS00910 (F0316_00910)	metJ	186144..186461 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
F0316_RS00915 (F0316_00915)	-	186571..187848 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
F0316_RS00920 (F0316_00920)	rpmE	188156..188374 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
F0316_RS00925 (F0316_00925)	priA	188629..190833 (+)	2205	WP_149560147.1	primosomal protein N'	-
F0316_RS00930 (F0316_00930)	cytR	191139..192146 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
F0316_RS00935 (F0316_00935)	-	192318..192869 (+)	552	WP_001891621.1	SPOR domain-containing protein	-
F0316_RS00940 (F0316_00940)	hslV	193006..193563 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
F0316_RS00945 (F0316_00945)	hslU	193629..194960 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
F0316_RS00950 (F0316_00950)	-	195064..195981 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
F0316_RS00955 (F0316_00955)	rraA	196056..196571 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=385037 F0316_RS00930 WP_000224452.1 191139..192146(+) (cytR) [Vibrio cholerae strain RFB16]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=385037 F0316_RS00930 WP_000224452.1 191139..192146(+) (cytR) [Vibrio cholerae strain RFB16]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCTGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904