Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG559_RS00520 Genome accession   NZ_CP051508
Coordinates   104228..104695 (-) Length   155 a.a.
NCBI ID   WP_180615665.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-010     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 99228..109695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG559_RS00505 (HG559_00505) - 99631..100413 (-) 783 WP_202166107.1 glycosyltransferase family 2 protein -
  HG559_RS00510 (HG559_00510) tlpB 100444..102141 (-) 1698 WP_202166112.1 methyl-accepting chemotaxis protein TlpB -
  HG559_RS00515 (HG559_00515) - 102347..104092 (-) 1746 WP_202166113.1 5'-nucleotidase C-terminal domain-containing protein -
  HG559_RS00520 (HG559_00520) luxS 104228..104695 (-) 468 WP_180615665.1 S-ribosylhomocysteine lyase Regulator
  HG559_RS00525 (HG559_00525) - 104730..105872 (-) 1143 WP_202132956.1 cystathionine gamma-synthase -
  HG559_RS00530 (HG559_00530) - 105893..106810 (-) 918 WP_202132957.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG559_RS00535 (HG559_00535) - 106918..107492 (+) 575 Protein_98 hypothetical protein -
  HG559_RS00540 (HG559_00540) dnaK 107631..109493 (-) 1863 WP_000521035.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17696.21 Da        Isoelectric Point: 6.8403

>NTDB_id=385010 HG559_RS00520 WP_180615665.1 104228..104695(-) (luxS) [Helicobacter pylori strain ASHA-010]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLVRAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=385010 HG559_RS00520 WP_180615665.1 104228..104695(-) (luxS) [Helicobacter pylori strain ASHA-010]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGTGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368