Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | F0M21_RS17740 | Genome accession | NZ_CP043546 |
| Coordinates | 3563310..3564455 (+) | Length | 381 a.a. |
| NCBI ID | WP_012118686.1 | Uniprot ID | A3KLD4 |
| Organism | Bacillus velezensis strain SYP-B637 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3558310..3569455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0M21_RS17715 (F0M21_17715) | - | 3559208..3559636 (-) | 429 | WP_007407634.1 | DUF1934 domain-containing protein | - |
| F0M21_RS17720 (F0M21_17720) | - | 3559790..3560301 (+) | 512 | Protein_3405 | bacteriocin biosynthesis protein AlbG | - |
| F0M21_RS17725 (F0M21_17725) | - | 3560308..3561684 (-) | 1377 | WP_012118684.1 | YncE family protein | - |
| F0M21_RS17730 (F0M21_17730) | - | 3561724..3563079 (-) | 1356 | WP_012118685.1 | YncE family protein | - |
| F0M21_RS17740 (F0M21_17740) | rapF | 3563310..3564455 (+) | 1146 | WP_012118686.1 | tetratricopeptide repeat protein | Regulator |
| F0M21_RS17745 (F0M21_17745) | phrF | 3564439..3564558 (+) | 120 | WP_007407639.1 | PhrC/PhrF family phosphatase-inhibitory pheromone | Regulator |
| F0M21_RS17750 (F0M21_17750) | - | 3564756..3564959 (+) | 204 | WP_007407640.1 | helix-turn-helix transcriptional regulator | - |
| F0M21_RS17755 (F0M21_17755) | - | 3564973..3565176 (+) | 204 | WP_007407641.1 | hypothetical protein | - |
| F0M21_RS17760 (F0M21_17760) | - | 3565211..3565396 (+) | 186 | WP_007407642.1 | DUF4177 domain-containing protein | - |
| F0M21_RS17765 (F0M21_17765) | - | 3565582..3565863 (+) | 282 | WP_007407643.1 | hypothetical protein | - |
| F0M21_RS17770 (F0M21_17770) | - | 3565907..3566419 (+) | 513 | WP_023357177.1 | stage II sporulation protein M | - |
| F0M21_RS17780 (F0M21_17780) | - | 3567010..3567228 (-) | 219 | WP_003151056.1 | LuxR C-terminal-related transcriptional regulator | - |
| F0M21_RS17785 (F0M21_17785) | speB | 3567396..3568268 (-) | 873 | WP_007614448.1 | agmatinase | - |
| F0M21_RS17790 (F0M21_17790) | speE | 3568327..3569157 (-) | 831 | WP_003151052.1 | spermidine synthase | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 45500.54 Da Isoelectric Point: 4.5407
>NTDB_id=385008 F0M21_RS17740 WP_012118686.1 3563310..3564455(+) (rapF) [Bacillus velezensis strain SYP-B637]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQALLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQALLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
Nucleotide
Download Length: 1146 bp
>NTDB_id=385008 F0M21_RS17740 WP_012118686.1 3563310..3564455(+) (rapF) [Bacillus velezensis strain SYP-B637]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCTAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCTGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCTAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCTGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
78.215 |
100 |
0.782 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
56.579 |
99.738 |
0.564 |