Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG560_RS06925 Genome accession   NZ_CP051507
Coordinates   1451780..1453015 (-) Length   411 a.a.
NCBI ID   WP_000734978.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446780..1458015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG560_RS06885 (HG560_06865) - 1446899..1448626 (-) 1728 WP_202170283.1 type IV secretory system conjugative DNA transfer family protein -
  HG560_RS06890 (HG560_06870) - 1448627..1449184 (-) 558 WP_001167785.1 hypothetical protein -
  HG560_RS06895 (HG560_06875) - 1449185..1449475 (-) 291 WP_000159821.1 hypothetical protein -
  HG560_RS06900 (HG560_06880) - 1449472..1449927 (-) 456 Protein_1360 mobilization protein -
  HG560_RS06905 (HG560_06885) - 1449924..1450865 (-) 942 WP_000625127.1 ATPase, T2SS/T4P/T4SS family -
  HG560_RS06910 (HG560_06890) - 1450865..1451164 (-) 300 WP_000660135.1 hypothetical protein -
  HG560_RS06915 (HG560_06895) - 1451161..1451424 (-) 264 WP_000564645.1 hypothetical protein -
  HG560_RS06920 (HG560_06900) - 1451417..1451710 (-) 294 WP_000773943.1 hypothetical protein -
  HG560_RS06925 (HG560_06905) comB10 1451780..1453015 (-) 1236 WP_000734978.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG560_RS06930 (HG560_06910) - 1453012..1454553 (-) 1542 WP_000737117.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HG560_RS06935 (HG560_06915) - 1454553..1455536 (-) 984 WP_000416481.1 virB8 family protein -
  HG560_RS08240 - 1455538..1455666 (-) 129 WP_000243255.1 hypothetical protein -
  HG560_RS06940 (HG560_06920) - 1455666..1457600 (-) 1935 WP_000277567.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46492.52 Da        Isoelectric Point: 9.8699

>NTDB_id=384996 HG560_RS06925 WP_000734978.1 1451780..1453015(-) (comB10) [Helicobacter pylori strain SHIM-002]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFDKTLIKPQSPSFNYNTANEEEKTRLVILASRVSSQKETQPPTSIKNSVSNTKYK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADIKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNDIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=384996 HG560_RS06925 WP_000734978.1 1451780..1453015(-) (comB10) [Helicobacter pylori strain SHIM-002]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTGA
TAAAACGCTTATTAAGCCACAAAGTCCATCCTTCAATTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTGTTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATACAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCTAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATTATACTAAGCGATGCTAAGGGGGCTGATATCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATGATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.828

70.56

0.387

Multiple sequence alignment