Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG560_RS06685 Genome accession   NZ_CP051507
Coordinates   1396337..1397650 (-) Length   437 a.a.
NCBI ID   WP_000653541.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1391337..1402650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG560_RS06655 (HG560_06640) nadC 1391800..1392621 (-) 822 WP_000404041.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG560_RS06660 (HG560_06645) nadA 1392621..1393631 (-) 1011 WP_001141821.1 quinolinate synthase NadA -
  HG560_RS06665 (HG560_06650) - 1393621..1394424 (-) 804 WP_000968158.1 phosphatidylserine decarboxylase -
  HG560_RS06670 (HG560_06655) - 1394421..1394924 (-) 504 WP_000953078.1 hypothetical protein -
  HG560_RS06675 (HG560_06660) - 1394937..1395431 (-) 495 WP_000544982.1 hypothetical protein -
  HG560_RS06680 (HG560_06665) mqnP 1395424..1396308 (-) 885 WP_000913959.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG560_RS06685 (HG560_06670) comEC/comE3 1396337..1397650 (-) 1314 WP_000653541.1 ComEC/Rec2 family competence protein Machinery gene
  HG560_RS06690 (HG560_06675) - 1397647..1399113 (-) 1467 WP_000349785.1 replicative DNA helicase -
  HG560_RS06695 (HG560_06680) - 1399124..1400518 (-) 1395 WP_000938197.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HG560_RS06700 (HG560_06685) crdS 1400521..1401723 (-) 1203 WP_080024726.1 copper-sensing histidine kinase CrdS -
  HG560_RS06705 (HG560_06690) crdR 1401689..1402330 (-) 642 WP_001169800.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50241.31 Da        Isoelectric Point: 9.9068

>NTDB_id=384994 HG560_RS06685 WP_000653541.1 1396337..1397650(-) (comEC/comE3) [Helicobacter pylori strain SHIM-002]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHWRGFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTIFVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=384994 HG560_RS06685 WP_000653541.1 1396337..1397650(-) (comEC/comE3) [Helicobacter pylori strain SHIM-002]
TTGAAGGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCAAAAGAATACTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTGGAGTCTATGAAATCATGCTTTTTCCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCGGCTTCATTGATAGCGCTCATTCAAGCACTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AACAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGATTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-383)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95