Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG561_RS05720 Genome accession   NZ_CP051506
Coordinates   1200271..1201320 (+) Length   349 a.a.
NCBI ID   WP_000115526.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-007     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195271..1206320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG561_RS05705 (HG561_05695) - 1195901..1197663 (+) 1763 Protein_1116 hypothetical protein -
  HG561_RS05710 (HG561_05700) asd 1197854..1198894 (-) 1041 WP_000860913.1 aspartate-semialdehyde dehydrogenase -
  HG561_RS05715 (HG561_05705) hisS 1198881..1200209 (-) 1329 WP_000632530.1 histidine--tRNA ligase -
  HG561_RS05720 (HG561_05710) waaF 1200271..1201320 (+) 1050 WP_000115526.1 lipopolysaccharide heptosyltransferase II Regulator
  HG561_RS05725 (HG561_05715) - 1201514..1201837 (-) 324 WP_231844784.1 flagellar protein -
  HG561_RS07795 - 1201853..1202218 (-) 366 Protein_1121 flagellar protein -
  HG561_RS05730 (HG561_05720) fusA 1202763..1204841 (-) 2079 WP_000101892.1 elongation factor G -
  HG561_RS05735 (HG561_05725) rpsG 1204853..1205320 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HG561_RS05740 (HG561_05730) rpsL 1205336..1205743 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39545.41 Da        Isoelectric Point: 9.8130

>NTDB_id=384955 HG561_RS05720 WP_000115526.1 1200271..1201320(+) (waaF) [Helicobacter pylori strain SHIM-007]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=384955 HG561_RS05720 WP_000115526.1 1200271..1201320(+) (waaF) [Helicobacter pylori strain SHIM-007]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGACTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAATAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361