Detailed information NTG0384948

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: HG561_RS03320
• Genome accession: NZ_CP051506
• Coordinates: 662699..665524 (+)
• Length: 941 a.a.
• NCBI ID: WP_001163974.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-007
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 657699..670524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG561_RS03295 (HG561_03285)	-	658838..659002 (-)	165	WP_195154944.1	hypothetical protein	-
HG561_RS03300 (HG561_03290)	-	659075..659976 (-)	902	Protein_649	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-
HG561_RS03305 (HG561_03295)	-	660221..660565 (-)	345	WP_000023770.1	hypothetical protein	-
HG561_RS03310 (HG561_03300)	rsmH	660585..661511 (-)	927	WP_202168797.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
HG561_RS03315 (HG561_03305)	hopE	661703..662524 (-)	822	WP_000395386.1	Hop family outer membrane protein HopE	-
HG561_RS03320 (HG561_03310)	uvrA	662699..665524 (+)	2826	WP_001163974.1	excinuclease ABC subunit UvrA	Machinery gene
HG561_RS03325 (HG561_03315)	-	665742..666563 (-)	822	WP_202168798.1	hypothetical protein	-
HG561_RS03330 (HG561_03320)	flgR	666669..667814 (-)	1146	WP_202168799.1	transcriptional activator FlgR	-
HG561_RS03335 (HG561_03325)	-	667811..668284 (-)	474	WP_014662114.1	hypothetical protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104776.65 Da
• Isoelectric Point: 7.6218

>NTDB_id=384948 HG561_RS03320 WP_001163974.1 662699..665524(+) (uvrA) [Helicobacter pylori strain SHIM-007]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARIGEQFCPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENSSRIASAIEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCEYNGIDTALCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCEGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPKLELPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKIQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGTKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMIVIEHNLDIIKNADYIIDMGPDGGDKGGKVIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=384948 HG561_RS03320 WP_001163974.1 662699..665524(+) (uvrA) [Helicobacter pylori strain SHIM-007]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAATAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAGTTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGGCGCTATTTAGAGAGTTTGTCCAGCTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAAATTGAAGGCCTAACCCCTGCGATTGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGATTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCCATTA
GTTCTATGAGCGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTAGCCCCTATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTAAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGAGTGG
TTATCAATAGCGAAAATTCTTCACGGATCGCTAGCGCAATAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAATGCGCCAAGCATCAGGAAGCATTACAGCGAGCATAAGGCATGCTTTAAATGCAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCATTCAATTCGCCTAAAGGGGCGTGCGAGAGTTGTTTGGGTTTGGGGACAAAAT
TCAGTTTAGACATTAGTAAGATTTTAGACCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTGATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGAATACAATGGCATTGACACCGCGCTTTGTTTTAATGAATTGAA
TAAAGAGCAGCAGGACGCTCTTTTATATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAATAGCCCTTTAAAACGCC
CTTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGCGAGGGGCATCGTTTGAAAGCCTCAAGTTTGAGCGTCCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAGGTCTATCACTTTTTTAATGATCCCACGCATTTTAGCTACCTTAACGAGCAAGAAAAAAAGA
TCGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
CGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCTAGTCAAATCGGGAGCGGTCTGACGGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGTTTGCATGAAAAAGACACGCTCAAACTCATCAACACCCTTAGGAATTTGC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGACAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTAAAAGATTTATTGCAAAACAACCATTCTACCGC
TTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCTAAATTGGAACTCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACTGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATTTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAATTCAAAG
CTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTAGACCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCCACTTACACAGGAGTGATGGATGAAATCAGGATTTTATTTGCCGAGCAAAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGCTTTAATGTTAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCACTTTTTGCCTGATGTGTTGGTCCAATGCGATAGCTGTAAGGGCACTAAATACAACCCTCAGACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCCGATGTGTTAAACATGAGCGTAGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCTGTGAAGTTAAAAACGCTTATAGATGTGGGCTTAGGCTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTAGCTAAAGAATTGAGCAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCTACCACCGGTTTGCATTTTGAAGATGTGAATCACCTTTTACAAGTCTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGATAGTGATTGAGCATAATTTAGACATCATCAAAAACGCTGACTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGCGGGAAAGTCATTGCGAGCGGCACACCTTTAGAAGTGGCGCAAAATTGCGAAAAAACCCAAAGCTATACGGGAA
AATTTTTAGCTTTAGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (137-243)

• ABC transporter (ABC_tran) (621-857)

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	50.052	100	0.509
uvrA	Streptococcus pneumoniae TIGR4	50.052	100	0.509
uvrA	Streptococcus pneumoniae D39	50.052	100	0.509