Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HG561_RS03030 Genome accession   NZ_CP051506
Coordinates   609297..610190 (-) Length   297 a.a.
NCBI ID   WP_000481606.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 604297..615190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG561_RS03005 (HG561_02995) mobA 604736..605341 (-) 606 WP_014534253.1 molybdenum cofactor guanylyltransferase MobA -
  HG561_RS03010 (HG561_03000) moaA 605427..606392 (+) 966 WP_000959519.1 GTP 3',8-cyclase MoaA -
  HG561_RS07725 - 606651..608040 (+) 1390 Protein_595 hypothetical protein -
  HG561_RS07730 (HG561_03015) - 608182..608985 (+) 804 Protein_596 glycine zipper family protein -
  HG561_RS07735 - 609052..609288 (+) 237 WP_237393131.1 YkgJ family cysteine cluster protein -
  HG561_RS03030 (HG561_03020) pilA 609297..610190 (-) 894 WP_000481606.1 signal recognition particle-docking protein FtsY Machinery gene
  HG561_RS03035 (HG561_03025) - 610197..610754 (-) 558 WP_001220442.1 hypothetical protein -
  HG561_RS03040 (HG561_03030) - 610852..611526 (+) 675 WP_202168875.1 5-formyltetrahydrofolate cyclo-ligase -
  HG561_RS03045 (HG561_03035) rny 611504..613015 (+) 1512 WP_237393133.1 ribonuclease Y -
  HG561_RS03050 (HG561_03040) - 613016..614332 (-) 1317 WP_267470971.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33054.34 Da        Isoelectric Point: 6.9871

>NTDB_id=384947 HG561_RS03030 WP_000481606.1 609297..610190(-) (pilA) [Helicobacter pylori strain SHIM-007]
MFNFFKKIVNKIKGEEVKEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYYDK
TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSL
AYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV
IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=384947 HG561_RS03030 WP_000481606.1 609297..610190(-) (pilA) [Helicobacter pylori strain SHIM-007]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAGAGGCTAAAGAGAAAAAGCGCCA
AAGCGTTCCTAAAGAGGAATTAGAAGAAATTTTGATTGGCTTTGACATTCAATACGATTTGATAGAGAGCTTGTTAAATC
ATTTAGGCGATTTAATCACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTTGTGCGTGGGGAAAGCTATTATGATAAA
ACACGCCTAAAAACCATCACCACAAAACCCTTAGTGCATTTAATCGTGGGGGTTAATGGGGCGGGTAAAACCACAACGAT
CGCCAAACTCGCCAAGCTCTCTTTAAAACAGCATAAAAAAGCGCTTTTAGGGGCAGGCGATACTTTTAGAGCGGCTGCAG
TCAAACAGCTCCAATTATGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTA
GCTTATAACACCATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCA
GACCAACCTTAAAAACGAGCTTTCTAAAATCGCGCGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTATAAATTCC
TTATTTTAGACGGCACGCAAGGGAGTTCTGGACTCACTCAAGCCAAGATTTTCCATGAGACTTTGGCGTTAGACGGCGTG
ATTATGACTAAGCTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTA
TTTAGGAATGGGCGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGT
TTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(91-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.449

89.899

0.364

Multiple sequence alignment