Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG561_RS00500 Genome accession   NZ_CP051506
Coordinates   98226..98693 (-) Length   155 a.a.
NCBI ID   WP_202168511.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-007     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 93226..103693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG561_RS00485 (HG561_00480) - 93630..94412 (-) 783 WP_202168510.1 glycosyltransferase family 2 protein -
  HG561_RS00490 (HG561_00485) tlpB 94443..96140 (-) 1698 WP_000232117.1 methyl-accepting chemotaxis protein TlpB -
  HG561_RS00495 (HG561_00490) - 96348..98033 (-) 1686 WP_324185895.1 5'-nucleotidase C-terminal domain-containing protein -
  HG561_RS00500 (HG561_00495) luxS 98226..98693 (-) 468 WP_202168511.1 S-ribosylhomocysteine lyase Regulator
  HG561_RS00505 (HG561_00500) - 98707..99849 (-) 1143 WP_202168512.1 cystathionine gamma-synthase -
  HG561_RS00510 (HG561_00505) - 99870..100787 (-) 918 WP_202168513.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG561_RS00515 (HG561_00510) - 100895..101468 (+) 574 Protein_92 hypothetical protein -
  HG561_RS00520 (HG561_00515) dnaK 101607..103469 (-) 1863 WP_000521030.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17655.16 Da        Isoelectric Point: 6.8403

>NTDB_id=384930 HG561_RS00500 WP_202168511.1 98226..98693(-) (luxS) [Helicobacter pylori strain SHIM-007]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVIDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQSLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384930 HG561_RS00500 WP_202168511.1 98226..98693(-) (luxS) [Helicobacter pylori strain SHIM-007]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAACACTTAGTCGCTGAGATCATCCGCAACCACGCCAGTTATGTTATAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACCTTAG
AGGGCGCGCAGAGTTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment