Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG562_RS00505 Genome accession   NZ_CP051505
Coordinates   103655..104122 (-) Length   155 a.a.
NCBI ID   WP_000856642.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-010     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 98655..109122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG562_RS00490 (HG562_00490) - 99057..99839 (-) 783 WP_000922052.1 glycosyltransferase family 2 protein -
  HG562_RS00495 (HG562_00495) tlpB 99870..101567 (-) 1698 WP_000232116.1 methyl-accepting chemotaxis protein TlpB -
  HG562_RS00500 (HG562_00500) - 101775..103520 (-) 1746 WP_202170320.1 5'-nucleotidase C-terminal domain-containing protein -
  HG562_RS00505 (HG562_00505) luxS 103655..104122 (-) 468 WP_000856642.1 S-ribosylhomocysteine lyase Regulator
  HG562_RS00510 (HG562_00510) - 104136..105278 (-) 1143 WP_001242840.1 cystathionine gamma-synthase -
  HG562_RS00515 (HG562_00515) - 105299..106216 (-) 918 WP_014662180.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG562_RS00520 (HG562_00520) - 106324..106904 (+) 581 Protein_97 hypothetical protein -
  HG562_RS00525 (HG562_00525) dnaK 107043..108905 (-) 1863 WP_000521034.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17712.21 Da        Isoelectric Point: 6.8403

>NTDB_id=384889 HG562_RS00505 WP_000856642.1 103655..104122(-) (luxS) [Helicobacter pylori strain SHIM-010]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVIDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRTEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384889 HG562_RS00505 WP_000856642.1 103655..104122(-) (luxS) [Helicobacter pylori strain SHIM-010]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTATAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACCTTAG
AGGGCGCGCAGAATTTAGCACGCGCTTTTTTAGACAAACGCACTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381