Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HG563_RS05710 Genome accession   NZ_CP051504
Coordinates   1213702..1214751 (+) Length   349 a.a.
NCBI ID   WP_000115521.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-011     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208702..1219751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS05695 (HG563_05695) - 1209291..1211105 (+) 1815 WP_202273324.1 hypothetical protein -
  HG563_RS05700 (HG563_05700) asd 1211285..1212325 (-) 1041 WP_202273325.1 aspartate-semialdehyde dehydrogenase -
  HG563_RS05705 (HG563_05705) hisS 1212312..1213640 (-) 1329 WP_000632529.1 histidine--tRNA ligase -
  HG563_RS05710 (HG563_05710) waaF 1213702..1214751 (+) 1050 WP_000115521.1 lipopolysaccharide heptosyltransferase II Regulator
  HG563_RS05715 (HG563_05715) - 1214944..1215216 (-) 273 WP_000744165.1 hypothetical protein -
  HG563_RS05720 (HG563_05720) fusA 1215758..1217836 (-) 2079 WP_000101894.1 elongation factor G -
  HG563_RS05725 (HG563_05725) rpsG 1217848..1218315 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HG563_RS05730 (HG563_05730) rpsL 1218331..1218738 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39598.43 Da        Isoelectric Point: 9.7445

>NTDB_id=384874 HG563_RS05710 WP_000115521.1 1213702..1214751(+) (waaF) [Helicobacter pylori strain SHIM-011]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIEHIAILDLFITNDSGPMHVAASTQTPLIALFGPTDERETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=384874 HG563_RS05710 WP_000115521.1 1213702..1214751(+) (waaF) [Helicobacter pylori strain SHIM-011]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTCATCTTAGTGGGCCCACAAATGACTTGCGAACTCTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCACATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCCAGCACACAAACCCCCTTAATCGCTCTTTTTGGTCCCACTGATGAAAGAGAAA
CTCGCCCTTATAAAGCTCAAAAAACGATCGTGTTGAACCACCACCTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364

Multiple sequence alignment