Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG563_RS01300 Genome accession   NZ_CP051504
Coordinates   265656..266891 (+) Length   411 a.a.
NCBI ID   WP_202273506.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-011     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260656..271891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS01285 (HG563_01285) - 261068..263002 (+) 1935 WP_000277569.1 type IA DNA topoisomerase -
  HG563_RS07870 - 263002..263130 (+) 129 WP_000243255.1 hypothetical protein -
  HG563_RS01290 (HG563_01290) - 263132..264118 (+) 987 WP_000416482.1 VirB8/TrbF family protein -
  HG563_RS01295 (HG563_01295) - 264118..265659 (+) 1542 WP_000737116.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HG563_RS01300 (HG563_01300) comB10 265656..266891 (+) 1236 WP_202273506.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG563_RS01305 (HG563_01305) - 266961..267254 (+) 294 WP_000773943.1 hypothetical protein -
  HG563_RS01310 (HG563_01310) - 267247..267510 (+) 264 WP_202273507.1 hypothetical protein -
  HG563_RS01315 (HG563_01315) - 267507..267806 (+) 300 WP_078286912.1 hypothetical protein -
  HG563_RS01320 (HG563_01320) - 267806..268747 (+) 942 WP_000625128.1 ATPase, T2SS/T4P/T4SS family -
  HG563_RS01325 (HG563_01325) - 268744..269199 (+) 456 WP_000795438.1 hypothetical protein -
  HG563_RS01330 (HG563_01330) - 269196..269486 (+) 291 WP_000159821.1 hypothetical protein -
  HG563_RS01335 (HG563_01335) - 269487..270044 (+) 558 WP_001167784.1 hypothetical protein -
  HG563_RS01340 (HG563_01340) - 270045..271772 (+) 1728 WP_001208201.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46474.49 Da        Isoelectric Point: 9.8699

>NTDB_id=384853 HG563_RS01300 WP_202273506.1 265656..266891(+) (comB10) [Helicobacter pylori strain SHIM-011]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFDKTLIKPQSPSFNYNTANEEEKTRLVILASRVSSQKETQPPTSIKNSVSNTKYK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRIIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADIKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNDIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=384853 HG563_RS01300 WP_202273506.1 265656..266891(+) (comB10) [Helicobacter pylori strain SHIM-011]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTGA
TAAAACGCTTATTAAGCCACAAAGTCCATCCTTCAATTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTGTTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATACAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCTAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATAATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAATAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATTATATTAAGCGATGCTAAGGGGGCTGATATCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATGATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.483

70.56

0.384