Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG563_RS00510 Genome accession   NZ_CP051504
Coordinates   100269..100736 (-) Length   155 a.a.
NCBI ID   WP_000856640.1    Uniprot ID   B2URT5
Organism   Helicobacter pylori strain SHIM-011     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 95269..105736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS00495 (HG563_00495) - 95666..96448 (-) 783 WP_000922048.1 glycosyltransferase family 2 protein -
  HG563_RS00500 (HG563_00500) tlpB 96479..98176 (-) 1698 WP_202273443.1 methyl-accepting chemotaxis protein TlpB -
  HG563_RS00505 (HG563_00505) - 98384..100129 (-) 1746 WP_202273444.1 5'-nucleotidase C-terminal domain-containing protein -
  HG563_RS00510 (HG563_00510) luxS 100269..100736 (-) 468 WP_000856640.1 S-ribosylhomocysteine lyase Regulator
  HG563_RS00515 (HG563_00515) - 100771..101913 (-) 1143 WP_001242775.1 cystathionine gamma-synthase -
  HG563_RS00520 (HG563_00520) - 101934..102851 (-) 918 WP_202273445.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG563_RS00525 (HG563_00525) - 102959..103532 (+) 574 Protein_95 hypothetical protein -
  HG563_RS00530 (HG563_00530) dnaK 103670..105532 (-) 1863 WP_000521030.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17696.21 Da        Isoelectric Point: 6.8403

>NTDB_id=384848 HG563_RS00510 WP_000856640.1 100269..100736(-) (luxS) [Helicobacter pylori strain SHIM-011]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVIDWSP
MGCQTGFYLTVLNHDNYTEILEILEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384848 HG563_RS00510 WP_000856640.1 100269..100736(-) (luxS) [Helicobacter pylori strain SHIM-011]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTATAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGATTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2URT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment