Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | VIC01_RS17500 | Genome accession | NZ_CP043529 |
| Coordinates | 4086062..4087429 (+) | Length | 455 a.a. |
| NCBI ID | WP_005848851.1 | Uniprot ID | A0A3E4XUS6 |
| Organism | Phocaeicola vulgatus strain VIC01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4081062..4092429
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VIC01_RS17490 (VIC01_03541) | - | 4081886..4083097 (-) | 1212 | WP_005848847.1 | cofactor-independent phosphoglycerate mutase | - |
| VIC01_RS17495 (VIC01_03542) | thrA | 4083102..4085534 (-) | 2433 | WP_005848849.1 | bifunctional aspartate kinase/homoserine dehydrogenase I | - |
| VIC01_RS17500 (VIC01_03543) | radA | 4086062..4087429 (+) | 1368 | WP_005848851.1 | DNA repair protein RadA | Machinery gene |
| VIC01_RS17505 (VIC01_03544) | - | 4087469..4088119 (+) | 651 | WP_005842576.1 | DUF1847 domain-containing protein | - |
| VIC01_RS17510 (VIC01_03545) | - | 4088125..4089768 (+) | 1644 | WP_005848853.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| VIC01_RS17515 (VIC01_03546) | - | 4089896..4090516 (+) | 621 | WP_005848856.1 | response regulator transcription factor | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 49873.43 Da Isoelectric Point: 6.4203
>NTDB_id=384815 VIC01_RS17500 WP_005848851.1 4086062..4087429(+) (radA) [Phocaeicola vulgatus strain VIC01]
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEIIRKEPANKRPVSGLESVKSKPVTLNDITGGDEPRIDMHDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDKKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYVHI
KNTQPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEIERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKQILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEIIRKEPANKRPVSGLESVKSKPVTLNDITGGDEPRIDMHDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDKKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYVHI
KNTQPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEIERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKQILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG
Nucleotide
Download Length: 1368 bp
>NTDB_id=384815 VIC01_RS17500 WP_005848851.1 4086062..4087429(+) (radA) [Phocaeicola vulgatus strain VIC01]
ATGGCAAAGGAAAAGACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAATTATACGCAAGGAACCTGCAAACAAAAGACCGGTATCCGGCCTGGAATCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATTACCGGAGGGGACGAACCTCGAATTGATATGCACGACGAAGAACTGAAC
CGGGTATTGGGAGGCGGTTTAGTACCGGGATCACTCGTTCTACTGGGTGGTGAACCGGGGATAGGCAAATCCACTTTGGT
GCTGCAAACCGTACTTCATCTGCCTGACAAAAAAGTATTGTATATATCGGGAGAAGAGAGTGCCCGGCAATTAAAACTGC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATAGTCTGTGAAACTTCGTTGGAGCAGATTTACGTACATATC
AAGAATACACAACCCGATTTAGTGATTATCGACTCTATTCAAACCATCTCAACCGAAACGATAGACTCTTCTCCCGGCAG
TTTGGTACAGGTACGTGAATGTTCCGCTTCTATTTTAAAATTTGCCAAAGAAACAAATACGCCGGTCATTCTGATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGCCCCAAGGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTCCGCAGCATCAAGAACCGTTTCGGAAGCACCGCCGAACTGGGCATTTATGAAATGCG
CCAAAACGGTTTGCGCCAAGTGAGCAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGGATGAGCGGGGTTGCTA
TCGCCTCTGCCATAGAAGGAGTCCGCCCTTTCTTGATTGAAACACAGGCTTTAGTCAGTTCGGCAGTATATGGGAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAACATGCTTCTGGCAGTACTTGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTGAATATCGCAGGTGGATTGAAAGTGAATGATCCGGCCATCGACCTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACGGAAATAGAACGTGACACCTGCATGGCGGGTGAAGTAGGACTGAGTGGTGAGATC
CGACCTGTAAACCGTATTGAGCAACGCATCGGAGAAGCAGAGAAGTTAGGTTTCAAACAAATTCTTATACCGAAACATAA
TTTGCAAGGAATGGATACATCAAAATTAAAGATAGAAATCATTCCGGTAAGGAAGGTAGAAGAAGCGTTCCGGGCTTTGT
TTGGATGA
ATGGCAAAGGAAAAGACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAATTATACGCAAGGAACCTGCAAACAAAAGACCGGTATCCGGCCTGGAATCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATTACCGGAGGGGACGAACCTCGAATTGATATGCACGACGAAGAACTGAAC
CGGGTATTGGGAGGCGGTTTAGTACCGGGATCACTCGTTCTACTGGGTGGTGAACCGGGGATAGGCAAATCCACTTTGGT
GCTGCAAACCGTACTTCATCTGCCTGACAAAAAAGTATTGTATATATCGGGAGAAGAGAGTGCCCGGCAATTAAAACTGC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATAGTCTGTGAAACTTCGTTGGAGCAGATTTACGTACATATC
AAGAATACACAACCCGATTTAGTGATTATCGACTCTATTCAAACCATCTCAACCGAAACGATAGACTCTTCTCCCGGCAG
TTTGGTACAGGTACGTGAATGTTCCGCTTCTATTTTAAAATTTGCCAAAGAAACAAATACGCCGGTCATTCTGATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGCCCCAAGGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTCCGCAGCATCAAGAACCGTTTCGGAAGCACCGCCGAACTGGGCATTTATGAAATGCG
CCAAAACGGTTTGCGCCAAGTGAGCAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGGATGAGCGGGGTTGCTA
TCGCCTCTGCCATAGAAGGAGTCCGCCCTTTCTTGATTGAAACACAGGCTTTAGTCAGTTCGGCAGTATATGGGAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAACATGCTTCTGGCAGTACTTGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTGAATATCGCAGGTGGATTGAAAGTGAATGATCCGGCCATCGACCTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACGGAAATAGAACGTGACACCTGCATGGCGGGTGAAGTAGGACTGAGTGGTGAGATC
CGACCTGTAAACCGTATTGAGCAACGCATCGGAGAAGCAGAGAAGTTAGGTTTCAAACAAATTCTTATACCGAAACATAA
TTTGCAAGGAATGGATACATCAAAATTAAAGATAGAAATCATTCCGGTAAGGAAGGTAGAAGAAGCGTTCCGGGCTTTGT
TTGGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
52.288 |
100 |
0.527 |
| radA | Streptococcus mitis SK321 |
48.904 |
100 |
0.49 |
| radA | Streptococcus mitis NCTC 12261 |
48.904 |
100 |
0.49 |
| radA | Streptococcus pneumoniae Rx1 |
48.904 |
100 |
0.49 |
| radA | Streptococcus pneumoniae D39 |
48.904 |
100 |
0.49 |
| radA | Streptococcus pneumoniae R6 |
48.904 |
100 |
0.49 |
| radA | Streptococcus pneumoniae TIGR4 |
48.904 |
100 |
0.49 |