Detailed information NTG0384812

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG564_RS01035
• Genome accession: NZ_CP051503
• Coordinates: 211616..212851 (+)
• Length: 411 a.a.
• NCBI ID: WP_000734978.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-014
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 206616..217851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG564_RS01020 (HG564_01020)	-	207028..208962 (+)	1935	WP_202171952.1	type IA DNA topoisomerase	-
HG564_RS01025 (HG564_01025)	-	209092..210078 (+)	987	WP_000416482.1	VirB8/TrbF family protein	-
HG564_RS01030 (HG564_01030)	-	210078..211619 (+)	1542	WP_202171953.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG564_RS01035 (HG564_01035)	comB10	211616..212851 (+)	1236	WP_000734978.1	DNA type IV secretion system protein ComB10	Machinery gene
HG564_RS01040 (HG564_01040)	-	212921..213214 (+)	294	WP_000773943.1	hypothetical protein	-
HG564_RS01045 (HG564_01045)	-	213207..213470 (+)	264	WP_000564645.1	hypothetical protein	-
HG564_RS01050 (HG564_01050)	-	213467..213766 (+)	300	WP_202171954.1	hypothetical protein	-
HG564_RS01055 (HG564_01055)	-	213766..214707 (+)	942	WP_000625128.1	ATPase, T2SS/T4P/T4SS family	-
HG564_RS01060 (HG564_01060)	-	214704..215159 (+)	456	WP_000795438.1	hypothetical protein	-
HG564_RS01065 (HG564_01065)	-	215156..215446 (+)	291	WP_000159821.1	hypothetical protein	-
HG564_RS01070 (HG564_01070)	-	215447..216004 (+)	558	WP_001167785.1	hypothetical protein	-
HG564_RS01075 (HG564_01075)	-	216005..217732 (+)	1728	WP_001208196.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46492.52 Da
• Isoelectric Point: 9.8699

>NTDB_id=384812 HG564_RS01035 WP_000734978.1 211616..212851(+) (comB10) [Helicobacter pylori strain SHIM-014]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFDKTLIKPQSPSFNYNTANEEEKTRLVILASRVSSQKETQPPTSIKNSVSNTKYK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADIKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNDIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=384812 HG564_RS01035 WP_000734978.1 211616..212851(+) (comB10) [Helicobacter pylori strain SHIM-014]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTGA
TAAAACGCTTATTAAGCCACAAAGTCCATCCTTCAATTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTGTTAGCAGCCAAAAAGAAACACAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATACAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCTAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATTATACTAAGCGATGCTAAGGGGGCTGATATCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATGATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.828	70.56	0.387