Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAMF_RS29600 Genome accession   NC_014551
Coordinates   1858138..1858509 (+) Length   123 a.a.
NCBI ID   WP_232469737.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1853138..1863509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS29595 (BAMF_1791) - 1856574..1857785 (-) 1212 WP_013352340.1 cytochrome P450 family protein -
  BAMF_RS29600 (BAMF_1792) nucA/comI 1858138..1858509 (+) 372 WP_232469737.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAMF_RS29605 (BAMF_1793) - 1858593..1859324 (+) 732 WP_013352342.1 YoaK family protein -
  BAMF_RS29610 (BAMF_1794) - 1859359..1859721 (-) 363 WP_013352343.1 hypothetical protein -
  BAMF_RS29615 (BAMF_1795) - 1859914..1861242 (-) 1329 WP_013352344.1 S8 family peptidase -
  BAMF_RS29620 - 1861426..1861658 (+) 233 Protein_1840 hypothetical protein -
  BAMF_RS29625 (BAMF_1796) - 1861912..1862619 (+) 708 WP_013352345.1 poly-gamma-glutamate hydrolase family protein -
  BAMF_RS29630 (BAMF_1797) - 1862679..1863131 (+) 453 WP_013352346.1 OsmC family protein -
  BAMF_RS29635 (BAMF_1798) - 1863145..1863498 (-) 354 WP_014470379.1 DMT family transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13302.74 Da        Isoelectric Point: 5.5837

>NTDB_id=38481 BAMF_RS29600 WP_232469737.1 1858138..1858509(+) (nucA/comI) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MGAGIHSENTAEAASRYDHVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEERRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=38481 BAMF_RS29600 WP_232469737.1 1858138..1858509(+) (nucA/comI) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGGGCGCCGGCATCCATTCGGAGAATACTGCTGAAGCTGCATCCCGATATGATCATGTGCTGTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGGAATCATATAAAAGATGCCATTTCGGCAGGGCATTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGGAAAGAAGGAAAGAATCATTGAAAGGCATTCCGACAAAGCCTGGGTTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACGGAAGGCGGGGCAGGGGCTGACATCAGATATGTAACCCCTTCGGATAATCGCGGAGCCGGTTCATGGGTTGGAAA
TCAAATGAGCGGATATTCCGACGGTACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.557

99.187

0.561

Multiple sequence alignment