Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG564_RS00510 Genome accession   NZ_CP051503
Coordinates   100550..101017 (-) Length   155 a.a.
NCBI ID   WP_202171914.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-014     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 95550..106017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS00495 (HG564_00490) - 95953..96735 (-) 783 WP_202171911.1 glycosyltransferase family 2 protein -
  HG564_RS00500 (HG564_00495) tlpB 96766..98463 (-) 1698 WP_202171912.1 methyl-accepting chemotaxis protein TlpB -
  HG564_RS00505 (HG564_00500) - 98672..100357 (-) 1686 WP_338325792.1 5'-nucleotidase C-terminal domain-containing protein -
  HG564_RS00510 (HG564_00505) luxS 100550..101017 (-) 468 WP_202171914.1 S-ribosylhomocysteine lyase Regulator
  HG564_RS00515 (HG564_00510) - 101031..102173 (-) 1143 WP_202171915.1 cystathionine gamma-synthase -
  HG564_RS00520 (HG564_00515) - 102194..103111 (-) 918 WP_202171916.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG564_RS00525 (HG564_00520) - 103219..103797 (+) 579 Protein_94 hypothetical protein -
  HG564_RS00530 (HG564_00525) dnaK 103936..105798 (-) 1863 WP_000521029.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17683.21 Da        Isoelectric Point: 6.8403

>NTDB_id=384808 HG564_RS00510 WP_202171914.1 100550..101017(-) (luxS) [Helicobacter pylori strain SHIM-014]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVIDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQSLVRAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384808 HG564_RS00510 WP_202171914.1 100550..101017(-) (luxS) [Helicobacter pylori strain SHIM-014]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAACACTTAGTCGCTGAGATCATCCGCAACCACGCCAGTTATGTTATAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACCTTAG
AGGGCGCGCAGAGTTTAGTGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374

Multiple sequence alignment