Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG565_RS03250 Genome accession   NZ_CP051502
Coordinates   669674..671194 (+) Length   506 a.a.
NCBI ID   WP_202169899.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-001     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 664674..676194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG565_RS03220 (HG565_03210) moaC 664823..665299 (+) 477 WP_001131556.1 cyclic pyranopterin monophosphate synthase MoaC -
  HG565_RS03225 (HG565_03215) hpaA 665419..666201 (+) 783 WP_202169895.1 flagellar sheath lipoprotein HpaA -
  HG565_RS03230 (HG565_03220) - 666227..667063 (+) 837 WP_202169896.1 outer membrane protein -
  HG565_RS03235 (HG565_03225) tig 667176..668531 (+) 1356 WP_202169897.1 trigger factor -
  HG565_RS03240 (HG565_03230) clpP 668552..669139 (+) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HG565_RS03245 (HG565_03235) def 669144..669671 (+) 528 WP_202169898.1 peptide deformylase -
  HG565_RS03250 (HG565_03240) comM 669674..671194 (+) 1521 WP_202169899.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HG565_RS03255 (HG565_03245) - 671219..673279 (+) 2061 WP_202169900.1 heavy metal translocating P-type ATPase -
  HG565_RS03260 (HG565_03250) - 673315..674580 (+) 1266 WP_202169901.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57213.24 Da        Isoelectric Point: 8.6972

>NTDB_id=384786 HG565_RS03250 WP_202169899.1 669674..671194(+) (comM) [Helicobacter pylori strain PUNO-001]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKSNPNIFPMLLDIAIKHPHAKVIVPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNHKDTPSHSWTSKEMHQWVLLAFKQQKLRKQSAFNGKLNEKQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=384786 HG565_RS03250 WP_202169899.1 669674..671194(+) (comM) [Helicobacter pylori strain PUNO-001]
ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGGTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGACTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATTGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAATCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAGCACCCCCATGCTAAAG
TCATTGTGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCACTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAATAATAAATTGGTGGTTTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATCATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATGGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAAAGCGCTTTTAATGGTAAGCTTAATGAAAAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACAATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.64

100

0.966
  comM Acinetobacter baylyi ADP1

35.812

100

0.362

Multiple sequence alignment