Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG565_RS00535 Genome accession   NZ_CP051502
Coordinates   103244..103711 (-) Length   155 a.a.
NCBI ID   WP_202169558.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 98244..108711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG565_RS00520 (HG565_00520) - 98664..99446 (-) 783 WP_202169555.1 glycosyltransferase family 2 protein -
  HG565_RS00525 (HG565_00525) tlpB 99477..101174 (-) 1698 WP_202169556.1 methyl-accepting chemotaxis protein TlpB -
  HG565_RS00530 (HG565_00530) - 101362..103107 (-) 1746 WP_202169557.1 5'-nucleotidase C-terminal domain-containing protein -
  HG565_RS00535 (HG565_00535) luxS 103244..103711 (-) 468 WP_202169558.1 S-ribosylhomocysteine lyase Regulator
  HG565_RS00540 (HG565_00540) - 103746..104888 (-) 1143 WP_202169559.1 cystathionine gamma-synthase -
  HG565_RS00545 (HG565_00545) - 104909..105826 (-) 918 WP_202169560.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG565_RS00550 (HG565_00550) - 105940..106514 (+) 575 Protein_98 hypothetical protein -
  HG565_RS00555 (HG565_00555) dnaK 106653..108515 (-) 1863 WP_202169561.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17696.21 Da        Isoelectric Point: 6.8403

>NTDB_id=384770 HG565_RS00535 WP_202169558.1 103244..103711(-) (luxS) [Helicobacter pylori strain PUNO-001]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVIDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384770 HG565_RS00535 WP_202169558.1 103244..103711(-) (luxS) [Helicobacter pylori strain PUNO-001]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTATAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381