Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CVCAS_RS08520 Genome accession   NC_017486
Coordinates   1744051..1744722 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis CV56     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739051..1749722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS08495 (CVCAS_1671) pheA 1739356..1740195 (-) 840 WP_014570689.1 prephenate dehydratase -
  CVCAS_RS08500 (CVCAS_1672) - 1740197..1740685 (-) 489 WP_003132788.1 shikimate kinase -
  CVCAS_RS08505 (CVCAS_1673) aroA 1740709..1742001 (-) 1293 WP_003132786.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  CVCAS_RS08510 (CVCAS_1674) - 1742122..1743186 (-) 1065 WP_014570690.1 prephenate dehydrogenase -
  CVCAS_RS08515 (CVCAS_1675) - 1743189..1744064 (-) 876 WP_003132784.1 HAMP domain-containing sensor histidine kinase -
  CVCAS_RS08520 (CVCAS_1676) braR 1744051..1744722 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  CVCAS_RS08525 (CVCAS_1677) - 1744725..1745789 (-) 1065 WP_003132781.1 VanZ family protein -
  CVCAS_RS08530 (CVCAS_1678) - 1745970..1747973 (-) 2004 WP_003132779.1 ABC transporter permease -
  CVCAS_RS08535 (CVCAS_1679) - 1747966..1748745 (-) 780 WP_003132777.1 ABC transporter ATP-binding protein -
  CVCAS_RS08540 (CVCAS_1681) - 1748934..1749293 (-) 360 WP_010906119.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=38475 CVCAS_RS08520 WP_003132782.1 1744051..1744722(-) (braR) [Lactococcus lactis subsp. lactis CV56]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=38475 CVCAS_RS08520 WP_003132782.1 1744051..1744722(-) (braR) [Lactococcus lactis subsp. lactis CV56]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCGTTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTTACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment