Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG566_RS03745 Genome accession   NZ_CP051501
Coordinates   792352..793872 (-) Length   506 a.a.
NCBI ID   WP_202164038.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-002     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 787352..798872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG566_RS07655 - 788592..788726 (+) 135 WP_272928206.1 hypothetical protein -
  HG566_RS03735 (HG566_03725) - 788942..790231 (-) 1290 WP_202164036.1 restriction endonuclease subunit S -
  HG566_RS03740 (HG566_03730) - 790267..792327 (-) 2061 WP_202164037.1 heavy metal translocating P-type ATPase -
  HG566_RS03745 (HG566_03735) comM 792352..793872 (-) 1521 WP_202164038.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HG566_RS03750 (HG566_03740) def 793875..794402 (-) 528 WP_001185882.1 peptide deformylase -
  HG566_RS03755 (HG566_03745) clpP 794407..794994 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HG566_RS03760 (HG566_03750) tig 795015..796370 (-) 1356 WP_202164039.1 trigger factor -
  HG566_RS03765 (HG566_03755) - 796483..797319 (-) 837 WP_202164040.1 outer membrane protein -
  HG566_RS03770 (HG566_03760) hpaA 797345..798127 (-) 783 WP_202164041.1 flagellar sheath lipoprotein HpaA -
  HG566_RS03775 (HG566_03765) moaC 798247..798723 (-) 477 WP_202164042.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57177.20 Da        Isoelectric Point: 8.3918

>NTDB_id=384747 HG566_RS03745 WP_202164038.1 792352..793872(-) (comM) [Helicobacter pylori strain PUNO-002]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEVALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=384747 HG566_RS03745 WP_202164038.1 792352..793872(-) (comM) [Helicobacter pylori strain PUNO-002]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGGTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGAGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAGCACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGTCG
CTTTGATCGCTAGCGCTGGGTTTCACAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAATAATAAATTGGTGGTTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

35.812

100

0.362