Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BAMF_RS28040 Genome accession   NC_014551
Coordinates   1486757..1487221 (-) Length   154 a.a.
NCBI ID   WP_013352067.1    Uniprot ID   A0AAP7TCI0
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481757..1492221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS28025 (BAMF_1475) - 1482243..1484063 (+) 1821 WP_013352063.1 PAS domain-containing protein -
  BAMF_RS28030 (BAMF_1476) - 1484044..1485257 (-) 1214 Protein_1518 aminotransferase A -
  BAMF_RS41520 (BAMF_1477) - 1485459..1485620 (-) 162 WP_013352065.1 hypothetical protein -
  BAMF_RS28035 (BAMF_1478) cheV 1485809..1486720 (+) 912 WP_013352066.1 chemotaxis protein CheV -
  BAMF_RS28040 (BAMF_1479) kre 1486757..1487221 (-) 465 WP_013352067.1 YkyB family protein Regulator
  BAMF_RS28045 (BAMF_1480) - 1487344..1488636 (-) 1293 WP_013352068.1 MFS transporter -
  BAMF_RS28050 (BAMF_1481) - 1488712..1489206 (-) 495 WP_088030678.1 L,D-transpeptidase family protein -
  BAMF_RS28055 (BAMF_1482) - 1489281..1490144 (-) 864 WP_013352070.1 metallophosphoesterase -
  BAMF_RS28060 (BAMF_1483) fadH 1490288..1491052 (+) 765 WP_013352071.1 2,4-dienoyl-CoA reductase -
  BAMF_RS28065 (BAMF_1484) - 1491166..1491714 (+) 549 WP_013352072.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.57 Da        Isoelectric Point: 10.4864

>NTDB_id=38474 BAMF_RS28040 WP_013352067.1 1486757..1487221(-) (kre) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNLLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=38474 BAMF_RS28040 WP_013352067.1 1486757..1487221(-) (kre) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACTTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCCCTTGCCG
CCAACAGACAGCAGCCCGCTTATCATAAACCCGTGTTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

93.506

100

0.935

Multiple sequence alignment