Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG566_RS00535 Genome accession   NZ_CP051501
Coordinates   103793..104260 (-) Length   155 a.a.
NCBI ID   WP_202164638.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-002     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 98793..109260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG566_RS00520 (HG566_00520) - 99195..99977 (-) 783 WP_202164635.1 glycosyltransferase family 2 protein -
  HG566_RS00525 (HG566_00525) tlpB 100009..101706 (-) 1698 WP_202164636.1 methyl-accepting chemotaxis protein TlpB -
  HG566_RS00530 (HG566_00530) - 101912..103657 (-) 1746 WP_202164637.1 5'-nucleotidase C-terminal domain-containing protein -
  HG566_RS00535 (HG566_00535) luxS 103793..104260 (-) 468 WP_202164638.1 S-ribosylhomocysteine lyase Regulator
  HG566_RS00540 (HG566_00540) - 104295..105437 (-) 1143 WP_202164639.1 cystathionine gamma-synthase -
  HG566_RS00545 (HG566_00545) - 105458..106375 (-) 918 WP_202164641.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG566_RS00550 (HG566_00550) - 106492..107067 (+) 576 Protein_101 hypothetical protein -
  HG566_RS00555 (HG566_00555) dnaK 107206..109068 (-) 1863 WP_202164642.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17641.13 Da        Isoelectric Point: 6.8403

>NTDB_id=384730 HG566_RS00535 WP_202164638.1 103793..104260(-) (luxS) [Helicobacter pylori strain PUNO-002]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDSYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384730 HG566_RS00535 WP_202164638.1 103793..104260(-) (luxS) [Helicobacter pylori strain PUNO-002]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAGTTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374