Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG567_RS04105 Genome accession   NZ_CP051500
Coordinates   880592..881827 (-) Length   411 a.a.
NCBI ID   WP_202139288.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 875592..886827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS04065 (HG567_04050) - 875710..877438 (-) 1729 Protein_810 type IV secretory system conjugative DNA transfer family protein -
  HG567_RS04070 (HG567_04055) - 877439..877996 (-) 558 WP_001167786.1 hypothetical protein -
  HG567_RS04075 (HG567_04060) - 877997..878287 (-) 291 WP_202139283.1 hypothetical protein -
  HG567_RS04080 (HG567_04065) - 878284..878739 (-) 456 WP_202139284.1 mobilization protein -
  HG567_RS04085 (HG567_04070) - 878736..879677 (-) 942 WP_078216366.1 ATPase, T2SS/T4P/T4SS family -
  HG567_RS04090 (HG567_04075) - 879677..879976 (-) 300 WP_202139285.1 hypothetical protein -
  HG567_RS04095 (HG567_04080) - 879973..880236 (-) 264 WP_202139286.1 hypothetical protein -
  HG567_RS04100 (HG567_04085) - 880229..880522 (-) 294 WP_202139287.1 hypothetical protein -
  HG567_RS04105 (HG567_04090) comB10 880592..881827 (-) 1236 WP_202139288.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG567_RS04110 (HG567_04095) - 881824..883365 (-) 1542 WP_202139289.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HG567_RS04115 (HG567_04100) - 883365..884351 (-) 987 WP_202163661.1 virB8 family protein -
  HG567_RS07880 - 884353..884481 (-) 129 WP_000243255.1 hypothetical protein -
  HG567_RS04120 (HG567_04105) - 884481..886415 (-) 1935 WP_202139291.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46484.69 Da        Isoelectric Point: 10.1056

>NTDB_id=384712 HG567_RS04105 WP_202139288.1 880592..881827(-) (comB10) [Helicobacter pylori strain PUNO-003]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPISSYLFQAYQGIKNKIDAINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEDEKTRLVILASRISSQKETQPPISIKNSVSHIKSK
EKRELEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=384712 HG567_RS04105 WP_202139288.1 880592..881827(-) (comB10) [Helicobacter pylori strain PUNO-003]
ATGAAAAAACTTCTTTTACTCTTGGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCCATTTCATCTTATTTGTTTC
AAGCTTACCAAGGTATTAAGAATAAAATAGATGCTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGATGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCCATTTCTATAAAAAACAGCGTTTCTCACATAAAATCCAAA
GAAAAACGAGAACTTGAAAAAGAATACGGCTCTAGTGGGTTTAAAAATTTTAAAAGAAAAAATATAGCGAGCAGTGAAAA
CAAACTTTTAAGAACAATTACAGCTGATAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATCATCACGCCACAAGG
AGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGCATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAATCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

45.98

96.837

0.445