Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG567_RS03735 Genome accession   NZ_CP051500
Coordinates   807936..809456 (-) Length   506 a.a.
NCBI ID   WP_202140198.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802936..814456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS03725 (HG567_03710) - 804639..805760 (-) 1122 WP_202164010.1 restriction endonuclease subunit S -
  HG567_RS03730 (HG567_03715) - 805851..807911 (-) 2061 WP_202164011.1 heavy metal translocating P-type ATPase -
  HG567_RS03735 (HG567_03720) comM 807936..809456 (-) 1521 WP_202140198.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HG567_RS03740 (HG567_03725) def 809462..809986 (-) 525 WP_202140199.1 peptide deformylase -
  HG567_RS03745 (HG567_03730) clpP 809991..810578 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HG567_RS03750 (HG567_03735) tig 810599..811954 (-) 1356 WP_202164012.1 trigger factor -
  HG567_RS03755 (HG567_03740) - 812066..812902 (-) 837 WP_202140201.1 outer membrane protein -
  HG567_RS03760 (HG567_03745) hpaA 812935..813717 (-) 783 WP_202140202.1 flagellar sheath lipoprotein HpaA -
  HG567_RS03765 (HG567_03750) moaC 813830..814306 (-) 477 WP_001131537.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57239.32 Da        Isoelectric Point: 8.3907

>NTDB_id=384708 HG567_RS03735 WP_202140198.1 807936..809456(-) (comM) [Helicobacter pylori strain PUNO-003]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGTQNPCLCGNLLSATKACRCQDREIAQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAKKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=384708 HG567_RS03735 WP_202140198.1 807936..809456(-) (comM) [Helicobacter pylori strain PUNO-003]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAAGCAACGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTACCCAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGATATTGCCATTAAGCACCCCCATGCTAAAA
TCATTGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATTTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTGGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTAATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGACTCAAAACCCTTGTTTGTGCGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCGCGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCATCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CAAAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGTTCTGTCAATAAGGTTAAAAAAGTCGCTAGA
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.008

100

0.364