Detailed information NTG0384691

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HG567_RS01250
• Genome accession: NZ_CP051500
• Coordinates: 260594..263164 (+)
• Length: 856 a.a.
• NCBI ID: WP_202139890.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-003
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 255594..268164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG567_RS01225 (HG567_01225)	xseA	256227..257489 (+)	1263	WP_202139887.1	exodeoxyribonuclease VII large subunit	-
HG567_RS01230 (HG567_01230)	-	257508..258662 (-)	1155	WP_202140215.1	site-specific DNA-methyltransferase	-
HG567_RS01235 (HG567_01235)	-	258673..258915 (-)	243	WP_202140216.1	hypothetical protein	-
HG567_RS01240 (HG567_01240)	-	259077..259766 (+)	690	WP_202139888.1	BsaWI family type II restriction enzyme	-
HG567_RS01245 (HG567_01245)	-	259763..260521 (+)	759	WP_202139889.1	site-specific DNA-methyltransferase	-
HG567_RS01250 (HG567_01250)	clpC	260594..263164 (+)	2571	WP_202139890.1	AAA family ATPase	Regulator
HG567_RS01255 (HG567_01255)	-	263221..263940 (+)	720	WP_001912571.1	cytochrome c biogenesis protein CcdA	-
HG567_RS01260 (HG567_01260)	-	263950..265083 (+)	1134	WP_202139891.1	dihydroorotase family protein	-
HG567_RS01265 (HG567_01265)	mqnF	265071..266297 (+)	1227	WP_202139892.1	aminofutalosine deaminase	-
HG567_RS01270 (HG567_01270)	-	266358..266600 (+)	243	WP_000780044.1	nuclease	-
HG567_RS01275 (HG567_01275)	miaB	266610..267923 (+)	1314	WP_202139893.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96593.57 Da
• Isoelectric Point: 6.3267

>NTDB_id=384691 HG567_RS01250 WP_202139890.1 260594..263164(+) (clpC) [Helicobacter pylori strain PUNO-003]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIEALKLSVQSELNKFAKVSQISK
QNIQLNQALIQSLENAQGLMAKRGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGATIQNKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVIALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEVQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEESLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENIQKKALERGINITLDEKAKEL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=384691 HG567_RS01250 WP_202139890.1 260594..263164(+) (clpC) [Helicobacter pylori strain PUNO-003]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTTTAGCCTTGCACCATAAAAA
CGCTGAAGTAACGCCCATGCACATGCTTTTTGCCATGCTCAATAATTCCCAAGGCATTCTTATTCAAGCCTTACAAAAAA
TGCCTGTGGATATTGAAGCTTTAAAGCTTAGCGTTCAAAGCGAGCTGAATAAGTTCGCTAAAGTCTCACAAATCAGCAAG
CAAAATATCCAATTAAACCAAGCTTTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAAGGGGCGATTCTTT
CATCGCTACCGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTTTAAAGCCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGTGCGACTATCCAAAATAAAAACGATGATTCCAATTTGGAAAGTTTAGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTGGATCCGGTGATCGGAAGAGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTATTAGGTGAGCCTGGAGTGGGGAAAACGGCTGTTG
TGGAAGGGCTAGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCATCGCTTTAGATTTA
AGCTTGTTGGTGGCTGGGGCGAAATACAGAGGCGAGTTTGAAGAGCGCCTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCAGCGA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCATTGCAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACCATTAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGACTTGATTGATGAGGGGGCGGCCCAATTAAAAATG
CAAATGGAATCAGAGCCGGCCAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGACTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGTGCAATTTGAAAACGAAAAAGAAGTGTTCAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATATTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAGCATAAATGGGAAGCGATGCAACAAAATGGGGCGTTATTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCGCTCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGGCTTAGCGATAGCAACAAGCCCATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAACCTTATACGGATTGACATGAGCGAATATATGGAAAAG
CACGCTATAAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAGCCTTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTCTTGTTGCAGGTTT
TAGATGAGGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGCGCGCTTTTAGAAGAAAGTTTGAGTGAAGCCGATAAGCAAAAAGCGATTAAAGAAAGCTTGAGGCAATTTTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTATCATTAATATCGTGG
GGATACTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAAAGGCAAAAGAATTG
ATCGCAGAAGCGGGATTTGACAGATTTTATGGTGCTAGACCCCTAAAACGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAATTAAAGAGAATGACAGCGTGGCGTTTGTGGTGGAAAATAACGAGATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• AAA lid domain (AAA_lid_9) (339-440)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.184	100	0.44
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.317	100	0.425
clpE	Streptococcus mutans UA159	44.017	82.009	0.361