Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HG567_RS01045 Genome accession   NZ_CP051500
Coordinates   219162..220508 (+) Length   448 a.a.
NCBI ID   WP_202139839.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 214162..225508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS01020 (HG567_01020) - 215164..215790 (-) 627 WP_202139836.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  HG567_RS01025 (HG567_01025) - 215856..216320 (+) 465 WP_202139837.1 helix-turn-helix domain-containing protein -
  HG567_RS01030 (HG567_01030) - 216495..217658 (+) 1164 WP_000941678.1 NifS family cysteine desulfurase -
  HG567_RS01035 (HG567_01035) - 217680..218660 (+) 981 WP_001051999.1 iron-sulfur cluster assembly scaffold protein NifU -
  HG567_RS01040 (HG567_01040) - 218816..219049 (+) 234 WP_000858680.1 ribbon-helix-helix domain-containing protein -
  HG567_RS01045 (HG567_01045) radA/sms 219162..220508 (+) 1347 WP_202139839.1 DNA repair protein RadA Machinery gene
  HG567_RS01050 (HG567_01050) msrB 220632..221711 (+) 1080 WP_202139846.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HG567_RS01055 (HG567_01055) - 222081..222914 (-) 834 WP_202139848.1 sulfite exporter TauE/SafE family protein -
  HG567_RS01060 (HG567_01060) - 223118..225205 (-) 2088 WP_237393066.1 SabA family sialic acid-binding adhesin -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49430.44 Da        Isoelectric Point: 8.0293

>NTDB_id=384690 HG567_RS01045 WP_202139839.1 219162..220508(+) (radA/sms) [Helicobacter pylori strain PUNO-003]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLHALKKPLPQAQKSVSIVAIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAVFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=384690 HG567_RS01045 WP_202139839.1 219162..220508(+) (radA/sms) [Helicobacter pylori strain PUNO-003]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGTTGGGCAAGTGCGTTCAATG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAGCTCAAAAGGAAGTTTTACACGCGCTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGTTGCAATTGAGCATGAAGAAGTCATTAAGTTTTCTTCCACTCAAAGCGAATTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAGAACCAGCAAAAGGTTTTGTACGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCGAAT
ATTGAGAGCGAAAATTATTTTGCGTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAACTCATGCGTTTAGCCAAAACAAGAGATATTGCTGTTTTTATCATCG
GCCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGGGTGCTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAGATCGGCTTGTTTGAAAT
GAAAGAGCAGGGTTTGGTGAGTGCTAAAGAAGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGTGCGA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTTATTAATGTGAGCGGAGGCATTAAGATTAGCGAGCCGGCTTGCGATTTGGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC
CAGTCAAAAAACCTCTATCAAATGCTATGAAGCCAATGCGGTAGGGAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.073

95.313

0.449
  radA Streptococcus pneumoniae Rx1

46.009

95.089

0.437
  radA Streptococcus pneumoniae D39

46.009

95.089

0.437
  radA Streptococcus pneumoniae R6

46.009

95.089

0.437
  radA Streptococcus pneumoniae TIGR4

46.009

95.089

0.437
  radA Streptococcus mitis SK321

46.009

95.089

0.437
  radA Streptococcus mitis NCTC 12261

45.775

95.089

0.435

Multiple sequence alignment