Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FLQ07_RS16190 Genome accession   NZ_CP043501
Coordinates   3117056..3117958 (+) Length   300 a.a.
NCBI ID   WP_096748092.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain A4-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3112056..3122958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLQ07_RS16170 (FLQ07_16170) - 3112708..3114405 (+) 1698 WP_096748091.1 hypothetical protein -
  FLQ07_RS16175 (FLQ07_16175) - 3114402..3114686 (+) 285 WP_020451377.1 FlhB-like flagellar biosynthesis protein -
  FLQ07_RS16180 (FLQ07_16180) sucC 3114862..3116022 (+) 1161 WP_026579739.1 ADP-forming succinate--CoA ligase subunit beta -
  FLQ07_RS16185 (FLQ07_16185) sucD 3116041..3116943 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  FLQ07_RS16190 (FLQ07_16190) dprA 3117056..3117958 (+) 903 WP_096748092.1 DNA-processing protein DprA Machinery gene
  FLQ07_RS16195 (FLQ07_16195) topA 3118163..3120238 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  FLQ07_RS16200 (FLQ07_16200) trmFO 3120314..3121618 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FLQ07_RS16205 (FLQ07_16205) xerC 3121685..3122599 (+) 915 WP_035338771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33119.60 Da        Isoelectric Point: 10.1513

>NTDB_id=384679 FLQ07_RS16190 WP_096748092.1 3117056..3117958(+) (dprA) [Bacillus paralicheniformis strain A4-3]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAKQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKIIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSCGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=384679 FLQ07_RS16190 WP_096748092.1 3117056..3117958(+) (dprA) [Bacillus paralicheniformis strain A4-3]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGAAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAATCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCACAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTGCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Haemophilus influenzae Rd KW20

45.763

78.667

0.36

Multiple sequence alignment