Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   FLQ07_RS12660 Genome accession   NZ_CP043501
Coordinates   2463410..2463988 (+) Length   192 a.a.
NCBI ID   WP_096747985.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain A4-3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2458410..2468988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLQ07_RS12640 (FLQ07_12640) - 2458908..2460200 (-) 1293 WP_025811745.1 globin-coupled sensor protein -
  FLQ07_RS12645 (FLQ07_12645) - 2460307..2461836 (-) 1530 WP_149208566.1 FAD-dependent oxidoreductase -
  FLQ07_RS12650 (FLQ07_12650) - 2461978..2462835 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  FLQ07_RS12655 (FLQ07_12655) - 2462904..2463137 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  FLQ07_RS12660 (FLQ07_12660) comK 2463410..2463988 (+) 579 WP_096747985.1 competence protein ComK Regulator
  FLQ07_RS12665 (FLQ07_12665) - 2463982..2464347 (-) 366 WP_020450830.1 hypothetical protein -
  FLQ07_RS12670 (FLQ07_12670) - 2464555..2465166 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  FLQ07_RS12675 (FLQ07_12675) lepB 2465179..2465697 (+) 519 WP_020450832.1 signal peptidase I -
  FLQ07_RS12680 (FLQ07_12680) - 2465841..2467616 (-) 1776 WP_096747987.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22390.61 Da        Isoelectric Point: 8.6274

>NTDB_id=384664 FLQ07_RS12660 WP_096747985.1 2463410..2463988(+) (comK) [Bacillus paralicheniformis strain A4-3]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILEADRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=384664 FLQ07_RS12660 WP_096747985.1 2463410..2463988(+) (comK) [Bacillus paralicheniformis strain A4-3]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGGCTGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment