Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG568_RS00535 Genome accession   NZ_CP051499
Coordinates   104919..105386 (-) Length   155 a.a.
NCBI ID   WP_202167656.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-004     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 99919..110386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG568_RS00520 (HG568_00525) - 100342..101124 (-) 783 WP_202167653.1 glycosyltransferase family 2 protein -
  HG568_RS00525 (HG568_00530) tlpB 101155..102852 (-) 1698 WP_202167654.1 methyl-accepting chemotaxis protein TlpB -
  HG568_RS00530 (HG568_00535) - 103038..104783 (-) 1746 WP_202167655.1 5'-nucleotidase C-terminal domain-containing protein -
  HG568_RS00535 (HG568_00540) luxS 104919..105386 (-) 468 WP_202167656.1 S-ribosylhomocysteine lyase Regulator
  HG568_RS00540 (HG568_00545) - 105421..106563 (-) 1143 WP_202167657.1 cystathionine gamma-synthase -
  HG568_RS00545 (HG568_00550) - 106584..107501 (-) 918 WP_202167658.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG568_RS00550 (HG568_00555) - 107757..108749 (+) 993 WP_202168082.1 IS1595 family transposase -
  HG568_RS00555 (HG568_00560) - 108944..109540 (+) 597 WP_237393424.1 BsaWI family type II restriction enzyme -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17680.21 Da        Isoelectric Point: 6.8403

>NTDB_id=384651 HG568_RS00535 WP_202167656.1 104919..105386(-) (luxS) [Helicobacter pylori strain PUNO-004]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHAGYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLVRAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384651 HG568_RS00535 WP_202167656.1 104919..105386(-) (luxS) [Helicobacter pylori strain PUNO-004]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAGGTCAAAGCCCCTTATGTGCGTATCGCCGA
TCGCAAAAAGGGCGTTAATGGAGATTTGATTATCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATTCGCAACCATGCCGGTTATGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAAAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACCTTAG
AGGGCGCGCAGAATTTAGTGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment