Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FLQ07_RS03130 Genome accession   NZ_CP043501
Coordinates   586364..587053 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain A4-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 581364..592053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLQ07_RS03095 (FLQ07_03095) - 581535..582011 (-) 477 WP_023856391.1 flagellar protein FlgN -
  FLQ07_RS03100 (FLQ07_03100) flgM 582030..582296 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  FLQ07_RS03105 (FLQ07_03105) - 582376..582795 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  FLQ07_RS03110 (FLQ07_03110) comFC 582854..583588 (-) 735 WP_096748349.1 double zinc ribbon domain-containing protein Machinery gene
  FLQ07_RS03115 (FLQ07_03115) - 583545..583829 (-) 285 WP_096748350.1 late competence development ComFB family protein -
  FLQ07_RS03120 (FLQ07_03120) comFA 583884..585278 (-) 1395 WP_096748475.1 DEAD/DEAH box helicase Machinery gene
  FLQ07_RS03125 (FLQ07_03125) - 585402..586244 (-) 843 WP_096748351.1 DegV family protein -
  FLQ07_RS03130 (FLQ07_03130) degU 586364..587053 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  FLQ07_RS03135 (FLQ07_03135) degS 587135..588292 (-) 1158 WP_020453119.1 histidine kinase Regulator
  FLQ07_RS03140 (FLQ07_03140) - 588515..589153 (+) 639 WP_020453120.1 YigZ family protein -
  FLQ07_RS03145 (FLQ07_03145) - 589168..590247 (+) 1080 WP_020453121.1 LCP family protein -
  FLQ07_RS03150 (FLQ07_03150) - 590300..590683 (-) 384 WP_020453122.1 hypothetical protein -
  FLQ07_RS03155 (FLQ07_03155) - 590792..591856 (-) 1065 WP_020453123.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=384640 FLQ07_RS03130 WP_003185730.1 586364..587053(-) (degU) [Bacillus paralicheniformis strain A4-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=384640 FLQ07_RS03130 WP_003185730.1 586364..587053(-) (degU) [Bacillus paralicheniformis strain A4-3]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAACATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment